Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002213A_C01 KMC002213A_c01
(705 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_055935.2| ALMS1 [Homo sapiens] 33 2.9
emb|CAD10391.2| ALMS1 protein [Homo sapiens] 33 2.9
emb|CAA06811.1| vif protein [Human immunodeficiency virus 1] 32 8.6
>ref|NP_055935.2| ALMS1 [Homo sapiens]
Length = 4167
Score = 33.5 bits (75), Expect = 2.9
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 200 DSKTLKSIYNSRPCTLQKKASLSYQVFQEFSHITGPGQAISPIP*TSQKPIKVNTCRSCN 379
D KT S S + +K ++SYQ SH+T +S +P + + V+T S +
Sbjct: 1745 DQKTGLSTVTSSFYSHTEKPNISYQQELPDSHLTEEALKVSNVPGPADQKTGVSTVTSTS 1804
Query: 380 YSRASTPVV 406
YS P+V
Sbjct: 1805 YSHREKPIV 1813
>emb|CAD10391.2| ALMS1 protein [Homo sapiens]
Length = 4169
Score = 33.5 bits (75), Expect = 2.9
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 200 DSKTLKSIYNSRPCTLQKKASLSYQVFQEFSHITGPGQAISPIP*TSQKPIKVNTCRSCN 379
D KT S S + +K ++SYQ SH+T +S +P + + V+T S +
Sbjct: 1747 DQKTGLSTVTSSFYSHTEKPNISYQQELPDSHLTEEALKVSNVPGPADQKTGVSTVTSTS 1806
Query: 380 YSRASTPVV 406
YS P+V
Sbjct: 1807 YSHREKPIV 1815
>emb|CAA06811.1| vif protein [Human immunodeficiency virus 1]
Length = 192
Score = 32.0 bits (71), Expect = 8.6
Identities = 18/55 (32%), Positives = 24/55 (42%)
Frame = +1
Query: 40 RSNYMKWMLLIKHNLYH*NGT*E*HSHNLGGEYYLNKYIT*HEALESPNHFKIGQ 204
R KW L+KH++Y S G YY + Y T H + S H +GQ
Sbjct: 15 RMKIRKWNSLVKHHMYV--------SKKAKGWYYRHHYETHHPKISSEVHIPVGQ 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,053,277
Number of Sequences: 1393205
Number of extensions: 11446289
Number of successful extensions: 23114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23111
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
