Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002207A_C02 KMC002207A_c02
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA05077.1| zinc-finger DNA binding protein [Petunia x hybrida] 79 1e-16
dbj|BAA05076.1| zinc-finger DNA binding protein [Petunia x hybrida] 75 2e-15
pir||T01985 zinc-finger protein, osmotic stress-induced - common... 74 3e-15
gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata] 75 5e-15
pir||T09602 probable zinc finger protein SCOF-1, cold-inducible ... 82 8e-15
>dbj|BAA05077.1| zinc-finger DNA binding protein [Petunia x hybrida]
Length = 274
Score = 79.3 bits (194), Expect(3) = 1e-16
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = -2
Query: 659 GKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASGT 480
G+ H CSICHK+FPTGQALGGHKR HYEG N+ N S +V TTSDGGA++ T
Sbjct: 164 GRSHVCSICHKAFPTGQALGGHKRRHYEGKLGGNNNNHRDGGGHSGSVVTTSDGGASTHT 223
Score = 38.9 bits (89), Expect = 0.062
Identities = 22/58 (37%), Positives = 30/58 (50%), Gaps = 15/58 (25%)
Frame = -2
Query: 650 HECSICHKSFPTGQALGGHKRCHYE---------------GGKSSNSTNSNVHANTSS 522
++CS+C KSF + QALGGHK H + +SNST+ NV N S+
Sbjct: 102 YKCSVCDKSFSSYQALGGHKASHRKITTIATTALLDDNNNNPTTSNSTSGNVVNNISA 159
Score = 25.0 bits (53), Expect(3) = 1e-16
Identities = 11/19 (57%), Positives = 16/19 (83%)
Frame = -1
Query: 372 EQEVESPLPVTAKRPAVVF 316
EQEVESP+P+ K+P ++F
Sbjct: 255 EQEVESPMPL--KKPRLLF 271
Score = 23.5 bits (49), Expect(3) = 1e-16
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = -3
Query: 481 HSLRGFDLNLPAPLTEFWTPLGI 413
H+LR FDLN+ P E L I
Sbjct: 222 HTLRDFDLNMLPPSPELQLGLSI 244
>dbj|BAA05076.1| zinc-finger DNA binding protein [Petunia x hybrida]
Length = 277
Score = 74.7 bits (182), Expect(3) = 2e-15
Identities = 35/61 (57%), Positives = 44/61 (71%), Gaps = 1/61 (1%)
Frame = -2
Query: 659 GKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVH-ANTSSAVTTTSDGGAASG 483
G+ H CSICHK+FP+GQALGGHKR HYEG N+ N++ S +V TTSDGGA++
Sbjct: 165 GRSHVCSICHKAFPSGQALGGHKRRHYEGKLGGNNNNNHRDGGGHSGSVVTTSDGGASTH 224
Query: 482 T 480
T
Sbjct: 225 T 225
Score = 40.8 bits (94), Expect = 0.016
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 15/58 (25%)
Frame = -2
Query: 650 HECSICHKSFPTGQALGGHKRCHYE---------------GGKSSNSTNSNVHANTSS 522
++CS+C KSF + QALGGHK H + +SNSTN NV N S+
Sbjct: 103 YKCSVCDKSFSSYQALGGHKASHRKITTIATTALLDDNNNNPTTSNSTNGNVVNNIST 160
Score = 25.0 bits (53), Expect(3) = 2e-15
Identities = 11/19 (57%), Positives = 16/19 (83%)
Frame = -1
Query: 372 EQEVESPLPVTAKRPAVVF 316
EQEVESP+P+ K+P ++F
Sbjct: 258 EQEVESPMPL--KKPRLLF 274
Score = 24.3 bits (51), Expect(3) = 2e-15
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 481 HSLRGFDLNLPAPLTEFWTPLGIGGG 404
H+LR FDLN+ P E L I G
Sbjct: 224 HTLRDFDLNMLPPSPELQLGLSIDCG 249
>pir||T01985 zinc-finger protein, osmotic stress-induced - common tobacco
gi|2981169|gb|AAC06243.1| osmotic stress-induced
zinc-finger protein [Nicotiana tabacum]
Length = 273
Score = 73.9 bits (180), Expect(3) = 3e-15
Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = -2
Query: 659 GKMHECSICHKSFPTGQALGGHKRCHYEG--GKSSNSTNSNVHANTSSAVTTTSDGGAAS 486
G+ H CSICHK+FPTGQALGGHKR HYEG G +S S +V TTSDGGA++
Sbjct: 161 GRSHVCSICHKAFPTGQALGGHKRRHYEGKLGGNSRDLGGGGGGGHSGSVLTTSDGGAST 220
Query: 485 GT 480
T
Sbjct: 221 HT 222
Score = 38.5 bits (88), Expect = 0.081
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = -2
Query: 650 HECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSA 519
++CS+C K+F + QALGGHK H + ++ + + + + +TS++
Sbjct: 105 YKCSVCDKAFSSYQALGGHKASHRKTTTTATAASDDNNPSTSTS 148
Score = 24.6 bits (52), Expect(3) = 3e-15
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 481 HSLRGFDLNLPA 446
H+LR FDLN+PA
Sbjct: 221 HTLRDFDLNMPA 232
Score = 24.3 bits (51), Expect(3) = 3e-15
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 369 QEVESPLPVTAKRPAVVF 316
QEVESP+P AK+P ++F
Sbjct: 255 QEVESPMP--AKKPRLLF 270
>gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata]
Length = 247
Score = 75.5 bits (184), Expect(2) = 5e-15
Identities = 33/59 (55%), Positives = 44/59 (73%), Gaps = 3/59 (5%)
Frame = -2
Query: 659 GKMHECSICHKSFPTGQALGGHKRCHYE---GGKSSNSTNSNVHANTSSAVTTTSDGGA 492
G+ HECSICHKSFPTGQALGGHKRCHYE GG S + N+ ++ ++ ++ TS+ G+
Sbjct: 142 GRSHECSICHKSFPTGQALGGHKRCHYEGSIGGNSIHHHNNTTNSGSNGGMSMTSEVGS 200
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = -2
Query: 650 HECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGG 495
++CS+C K+F + QALGGHK H + + + S N+++ TTT+ GG
Sbjct: 89 YKCSVCDKAFSSYQALGGHKASHRKLAGGEDQSTSFATTNSATVTTTTASGG 140
Score = 27.3 bits (59), Expect(2) = 5e-15
Identities = 15/28 (53%), Positives = 18/28 (63%)
Frame = -3
Query: 484 AHSLRGFDLNLPAPLTEFWTPLGIGGGD 401
+HS R FDLN+PA L EF + I G D
Sbjct: 205 SHSHRDFDLNIPA-LPEFRSNFFISGDD 231
>pir||T09602 probable zinc finger protein SCOF-1, cold-inducible - soybean
gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max]
Length = 240
Score = 81.6 bits (200), Expect = 8e-15
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -2
Query: 659 GKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASGT 480
GK HECSICHKSFPTGQALGGHKRCHYEG + N+ NSN S VT S+G ++ T
Sbjct: 135 GKAHECSICHKSFPTGQALGGHKRCHYEGNGNGNNNNSN------SVVTVASEGVGSTHT 188
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/55 (41%), Positives = 35/55 (62%), Gaps = 1/55 (1%)
Frame = -2
Query: 650 HECSICHKSFPTGQALGGHKRCHYE-GGKSSNSTNSNVHANTSSAVTTTSDGGAA 489
++CS+C KSFP+ QALGGHK H + G + + S +S+A T+++ GG A
Sbjct: 85 YKCSVCDKSFPSYQALGGHKASHRKLAGAAEDQPPST--TTSSAAATSSASGGKA 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,181,071
Number of Sequences: 1393205
Number of extensions: 15138907
Number of successful extensions: 142271
Number of sequences better than 10.0: 604
Number of HSP's better than 10.0 without gapping: 76064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122836
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
