Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002188A_C01 KMC002188A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09026 hypothetical protein T27E11.110 - Arabidopsis thalia... 82 5e-15
gb|AAM19770.1| AT4g27870/T27E11_110 [Arabidopsis thaliana] gi|27... 82 5e-15
gb|AAL08260.1| AT4g27870/T27E11_110 [Arabidopsis thaliana] 82 5e-15
ref|NP_567789.1| putative protein; protein id: At4g27870.1, supp... 82 5e-15
gb|AAM64466.1| unknown [Arabidopsis thaliana] 67 3e-10
>pir||T09026 hypothetical protein T27E11.110 - Arabidopsis thaliana
gi|4972118|emb|CAB43975.1| putative protein [Arabidopsis
thaliana] gi|7269640|emb|CAB81436.1| putative protein
[Arabidopsis thaliana]
Length = 770
Score = 82.4 bits (202), Expect = 5e-15
Identities = 43/114 (37%), Positives = 70/114 (60%)
Frame = -2
Query: 636 IFGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNNYMTYFKTITF 457
I G++PP+VY F+F E ++KD K+A+V GAS+ CI LLA AKA+ P +Y K+I +
Sbjct: 656 ITGILPPVVYYFSFSEKHNKDYKVASVFGASLFCIVLLAIAKAHVRYPRG--SYLKSILY 713
Query: 456 YVTSGVLGRIALAYLAGDLVKRLMEQLGWSEGGSGPNSILSLPET*FRETWIGF 295
Y + V ++Y+ G+ +++L+E+ GWS+G P + L R+ G+
Sbjct: 714 YGSIAV-SVSGISYVVGNFLEQLLEKHGWSDGSETPVGQMMLSSLMGRKAGFGY 766
>gb|AAM19770.1| AT4g27870/T27E11_110 [Arabidopsis thaliana]
gi|27363246|gb|AAO11542.1| At4g27870/T27E11_110
[Arabidopsis thaliana]
Length = 761
Score = 82.4 bits (202), Expect = 5e-15
Identities = 43/114 (37%), Positives = 70/114 (60%)
Frame = -2
Query: 636 IFGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNNYMTYFKTITF 457
I G++PP+VY F+F E ++KD K+A+V GAS+ CI LLA AKA+ P +Y K+I +
Sbjct: 647 ITGILPPVVYYFSFSEKHNKDYKVASVFGASLFCIVLLAIAKAHVRYPRG--SYLKSILY 704
Query: 456 YVTSGVLGRIALAYLAGDLVKRLMEQLGWSEGGSGPNSILSLPET*FRETWIGF 295
Y + V ++Y+ G+ +++L+E+ GWS+G P + L R+ G+
Sbjct: 705 YGSIAV-SVSGISYVVGNFLEQLLEKHGWSDGSETPVGQMMLSSLMGRKAGFGY 757
>gb|AAL08260.1| AT4g27870/T27E11_110 [Arabidopsis thaliana]
Length = 350
Score = 82.4 bits (202), Expect = 5e-15
Identities = 43/114 (37%), Positives = 70/114 (60%)
Frame = -2
Query: 636 IFGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNNYMTYFKTITF 457
I G++PP+VY F+F E ++KD K+A+V GAS+ CI LLA AKA+ P +Y K+I +
Sbjct: 236 ITGILPPVVYYFSFSEKHNKDYKVASVFGASLFCIVLLAIAKAHVRYPRG--SYLKSILY 293
Query: 456 YVTSGVLGRIALAYLAGDLVKRLMEQLGWSEGGSGPNSILSLPET*FRETWIGF 295
Y + V ++Y+ G+ +++L+E+ GWS+G P + L R+ G+
Sbjct: 294 YGSIAV-SVSGISYVVGNFLEQLLEKHGWSDGSETPVGQMMLSSLMGRKAGFGY 346
>ref|NP_567789.1| putative protein; protein id: At4g27870.1, supported by cDNA:
gi_15912252 [Arabidopsis thaliana]
Length = 396
Score = 82.4 bits (202), Expect = 5e-15
Identities = 43/114 (37%), Positives = 70/114 (60%)
Frame = -2
Query: 636 IFGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNNYMTYFKTITF 457
I G++PP+VY F+F E ++KD K+A+V GAS+ CI LLA AKA+ P +Y K+I +
Sbjct: 282 ITGILPPVVYYFSFSEKHNKDYKVASVFGASLFCIVLLAIAKAHVRYPRG--SYLKSILY 339
Query: 456 YVTSGVLGRIALAYLAGDLVKRLMEQLGWSEGGSGPNSILSLPET*FRETWIGF 295
Y + V ++Y+ G+ +++L+E+ GWS+G P + L R+ G+
Sbjct: 340 YGSIAV-SVSGISYVVGNFLEQLLEKHGWSDGSETPVGQMMLSSLMGRKAGFGY 392
>gb|AAM64466.1| unknown [Arabidopsis thaliana]
Length = 550
Score = 66.6 bits (161), Expect = 3e-10
Identities = 33/90 (36%), Positives = 54/90 (59%), Gaps = 4/90 (4%)
Frame = -2
Query: 633 FGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNN----YMTYFKT 466
FGL+PP+VY F+F E+ K+ KL +V S++C+ LL + K Y +P N Y K+
Sbjct: 435 FGLIPPLVYAFSFYETGIKNYKLISVFLGSLVCVILLGSIKVYVRKPTNSCGSTKAYLKS 494
Query: 465 ITFYVTSGVLGRIALAYLAGDLVKRLMEQL 376
+Y TS V+ ++Y+ GD++ +E+L
Sbjct: 495 AAYY-TSIVVASCGISYVVGDIMGEYIEKL 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,673,124
Number of Sequences: 1393205
Number of extensions: 11280912
Number of successful extensions: 27175
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 26455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27150
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
