Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002180A_C01 KMC002180A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70805.1| leucine-rich repeat resistance protein-like prote... 75 5e-13
dbj|BAB08479.1| leucine-rich repeat disease resistance protein-l... 70 1e-11
ref|NP_172844.1| disease resistance protein, putative; protein i... 67 1e-10
pir||B86272 protein F16A14.12 [imported] - Arabidopsis thaliana ... 66 2e-10
ref|NP_200932.1| Cf-5 disease resistance protein - like; protein... 62 3e-09
>gb|AAK70805.1| leucine-rich repeat resistance protein-like protein [Gossypium
hirsutum]
Length = 328
Score = 75.1 bits (183), Expect = 5e-13
Identities = 37/49 (75%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Frame = +2
Query: 404 SLTLILISALSI-LNLAHCKTLKRDVKALNEIKALLGWRVVYAWVGDDP 547
SLTLILIS + +++A+ KTLKRDVKALNEIKA LGWRVVYAW+GDDP
Sbjct: 6 SLTLILISIFAFSISIANSKTLKRDVKALNEIKASLGWRVVYAWIGDDP 54
>dbj|BAB08479.1| leucine-rich repeat disease resistance protein-like [Arabidopsis
thaliana] gi|22135942|gb|AAM91553.1| Cf-5 disease
resistance protein-like [Arabidopsis thaliana]
gi|23197592|gb|AAN15323.1| Cf-5 disease resistance
protein-like [Arabidopsis thaliana]
Length = 326
Score = 70.5 bits (171), Expect = 1e-11
Identities = 35/46 (76%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Frame = +2
Query: 413 LILISALSIL-NLAHCKTLKRDVKALNEIKALLGWRVVYAWVGDDP 547
L+LI S+L AH KTLKRDVKALNEIKA LGWRVVY+WVGDDP
Sbjct: 7 LLLICVFSLLIAFAHSKTLKRDVKALNEIKASLGWRVVYSWVGDDP 52
>ref|NP_172844.1| disease resistance protein, putative; protein id: At1g13910.1
[Arabidopsis thaliana] gi|26450219|dbj|BAC42228.1|
putative disease resistance protein [Arabidopsis
thaliana]
Length = 330
Score = 67.4 bits (163), Expect = 1e-10
Identities = 32/56 (57%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +2
Query: 383 MARIPITSLTLILISALSIL-NLAHCKTLKRDVKALNEIKALLGWRVVYAWVGDDP 547
MA + ++ ++ I AL +L N++ KTLKRD+KALNEIK L+GWR+VY+WVGDDP
Sbjct: 1 MANLSLSLYLILRIYALLLLFNVSFAKTLKRDMKALNEIKKLVGWRLVYSWVGDDP 56
>pir||B86272 protein F16A14.12 [imported] - Arabidopsis thaliana
gi|8778389|gb|AAF79397.1|AC068197_7 F16A14.12
[Arabidopsis thaliana]
Length = 383
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/65 (49%), Positives = 43/65 (65%)
Frame = +2
Query: 353 ISSSSSSVFKMARIPITSLTLILISALSILNLAHCKTLKRDVKALNEIKALLGWRVVYAW 532
I+S + R L L + + L + N++ KTLKRD+KALNEIK L+GWR+VY+W
Sbjct: 45 INSCLNDDVSTVRYDCLYLILRIYALLLLFNVSFAKTLKRDMKALNEIKKLVGWRLVYSW 104
Query: 533 VGDDP 547
VGDDP
Sbjct: 105 VGDDP 109
>ref|NP_200932.1| Cf-5 disease resistance protein - like; protein id: At5g61240.1
[Arabidopsis thaliana]
Length = 380
Score = 62.4 bits (150), Expect = 3e-09
Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 11/56 (19%)
Frame = +2
Query: 413 LILISALSIL-NLAHCKTLKRD----------VKALNEIKALLGWRVVYAWVGDDP 547
L+LI S+L AH KTLKRD VKALNEIKA LGWRVVY+WVGDDP
Sbjct: 7 LLLICVFSLLIAFAHSKTLKRDAFLKVNLLWTVKALNEIKASLGWRVVYSWVGDDP 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,843,614
Number of Sequences: 1393205
Number of extensions: 9374981
Number of successful extensions: 46653
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 39115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46482
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
