Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002177A_C01 KMC002177A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565838.1| expressed protein; protein id: At2g36220.1, sup... 53 4e-06
gb|AAM61505.1| unknown [Arabidopsis thaliana] 52 9e-06
ref|NP_190839.1| hypothetical protein; protein id: At3g52710.1, ... 47 4e-04
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 41 0.016
dbj|BAC41104.1| unnamed protein product [Mus musculus] 41 0.016
>ref|NP_565838.1| expressed protein; protein id: At2g36220.1, supported by cDNA:
12251., supported by cDNA: gi_15450732, supported by
cDNA: gi_18491122 [Arabidopsis thaliana]
gi|25408452|pir||B84778 hypothetical protein At2g36220
[imported] - Arabidopsis thaliana
gi|4510354|gb|AAD21443.1| expressed protein [Arabidopsis
thaliana] gi|15450733|gb|AAK96638.1| At2g36220/F2H17.17
[Arabidopsis thaliana] gi|18491123|gb|AAL69530.1|
At2g36220/F2H17.17 [Arabidopsis thaliana]
Length = 263
Score = 53.1 bits (126), Expect = 4e-06
Identities = 42/112 (37%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = -1
Query: 736 RSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFR--SGRRKKAHRETDSAAEDS 563
R RS R R+ R + P +K GF FRAIFR G + + RET ++ ++
Sbjct: 157 RVRSRRERSRRMHRQKSSRVEPVNRVKKPGFMASFRAIFRIKGGCKDVSARETHTSTRNT 216
Query: 562 TVTNSVVKARDSTASVNDASFAESISSEP--PGLGGMMRFASGRRSESWGVG 413
S + A SV D EP PGLGGM RFASGRR++ G G
Sbjct: 217 HDIRSRLPAEADEKSVFDGG-------EPVVPGLGGMTRFASGRRADLLGGG 261
>gb|AAM61505.1| unknown [Arabidopsis thaliana]
Length = 263
Score = 52.0 bits (123), Expect = 9e-06
Identities = 41/112 (36%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Frame = -1
Query: 736 RSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFR--SGRRKKAHRETDSAAEDS 563
R RS R R+ R + P +K GF FRAIFR G + + RET ++ ++
Sbjct: 157 RVRSRRERSRRMHRQKSSRVEPVNRVKKPGFMASFRAIFRIKGGCKDVSARETHTSTRNT 216
Query: 562 TVTNSVVKARDSTASVNDASFAESISSEP--PGLGGMMRFASGRRSESWGVG 413
S + A S+ D EP PGLGGM RFASGRR++ G G
Sbjct: 217 HDIRSRLPAEAVEKSIFDGG-------EPVVPGLGGMTRFASGRRADLLGGG 261
>ref|NP_190839.1| hypothetical protein; protein id: At3g52710.1, supported by cDNA:
gi_18377715, supported by cDNA: gi_20465290 [Arabidopsis
thaliana] gi|11357760|pir||T49024 hypothetical protein
F3C22.110 - Arabidopsis thaliana
gi|7669945|emb|CAB89232.1| putative protein [Arabidopsis
thaliana] gi|18377716|gb|AAL67008.1| unknown protein
[Arabidopsis thaliana] gi|20465291|gb|AAM20049.1|
unknown protein [Arabidopsis thaliana]
Length = 289
Score = 46.6 bits (109), Expect = 4e-04
Identities = 44/128 (34%), Positives = 58/128 (44%), Gaps = 20/128 (15%)
Frame = -1
Query: 751 KRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAA 572
KRDRSR R++ + ++ ++ P + +K GFF FRAIFR+G K + + A
Sbjct: 162 KRDRSR----RMQRQKSGRTNSFKDKPVPV-KKPGFFASFRAIFRTGGGCKDLSASGAHA 216
Query: 571 --EDSTVTNSVVKARDST---------------ASVNDASFAESISS-EP--PGLGGMMR 452
D V+ V R ST N SI EP PGLGGM R
Sbjct: 217 PRRDVVVSPPRVSVRRSTDIRGRLPPGDVGKSSPQRNSTGSRRSIDGGEPVLPGLGGMTR 276
Query: 451 FASGRRSE 428
F SGRR +
Sbjct: 277 FTSGRRPD 284
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 41.2 bits (95), Expect = 0.016
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Frame = +1
Query: 229 KSQSHKQLFNKPRHPSHSVRAPRERPASREICLSKRAPVHGCRRQSGYVSANTIETRGFR 408
+S+S L ++ R S + R R SR +R+ A+ + R R
Sbjct: 1875 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR----------ASPVSRRRSR 1924
Query: 409 IHLLPTTQTASPTRTASSHPNRAVRSRLTPQTTRRSRSPCYPAP*QRCSLRWNPPQQNQF 588
P T+ S +RT ++ R RSR P T RRSRS P +R R +P + +
Sbjct: 1925 SRTPPVTRRRSRSRTPTT--RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRS 1982
Query: 589 PGEPFSVDRTGK*HETS--RRNRVFSRFSPDFLLRRRWR 699
V R TS R R SR SP + RRR R
Sbjct: 1983 RSRTSPVTRRRSRSRTSPVTRRRSRSRTSP--VTRRRSR 2019
Score = 38.9 bits (89), Expect = 0.079
Identities = 38/111 (34%), Positives = 50/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 256 NKPRHPSHSVRAPRER-PASREICLSKRAPVHGCRRQSGYVSANTIETRGFRIHLLPTTQ 432
++ R P + R R R P +R S+ PV R +S + R R P T+
Sbjct: 1923 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS---RTPPVTRRRSRSRTSPITR 1979
Query: 433 TASPTRTASSHPNRAVRSRLTPQTTRRSRSPCYPAP*QRCSLRWNPPQQNQ 585
S +RT S R RSR +P T RRSRS P +R R PP Q+Q
Sbjct: 1980 RRSRSRT-SPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSR-TPPAQDQ 2028
Score = 35.8 bits (81), Expect = 0.67
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 17/180 (9%)
Frame = +1
Query: 211 ENQNQNKSQSHKQLFNKPRHPSHSVR----APRERPASREICLSKRAPVHGCRRQSGYVS 378
E +++S ++ + PR + S R +P+ R R S+R RR+ S
Sbjct: 1734 EPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGS 1793
Query: 379 ANTIETRGFRIHLLPTT----------QTASPTRTASSHPN---RAVRSRLTPQTTRRSR 519
+ + R R + SP R SS + R RSR P + +RSR
Sbjct: 1794 SQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSR 1853
Query: 520 SPCYPAP*QRCSLRWNPPQQNQFPGEPFSVDRTGK*HETSRRNRVFSRFSPDFLLRRRWR 699
S PAP +R R +P + + R TS +R SR S + RRR R
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR-SRTSVTRRRSR 1912
>dbj|BAC41104.1| unnamed protein product [Mus musculus]
Length = 2607
Score = 41.2 bits (95), Expect = 0.016
Identities = 49/162 (30%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Frame = +1
Query: 220 NQNKSQSHKQLFNKPRHPSHSVRAPRER--PASREICLSKRAPVHGCRRQSGYVSANTIE 393
++ +S+S ++ R S + R R R P SR S+ PV RR+S + T
Sbjct: 1744 SRRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPV--TRRRS---RSRTPT 1798
Query: 394 TRGFRIHLLPTTQTASPTRTASSHPNRAVRSRLTPQTTRRSRSPCYPAP*QRCSLRWNPP 573
R R P T+ S +RT R+ RSR +P T RRSRS P +R R +P
Sbjct: 1799 RRRSRSRTPPVTRRRSRSRTPPVTRRRS-RSRTSPVTRRRSRSRTSPVTRRRSRSRTSPV 1857
Query: 574 QQNQFPGEPFSVDRTGK*HETSRRNRVFSRFSPDFLLRRRWR 699
+ + V R T R SR L R+R R
Sbjct: 1858 TRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 1899
Score = 32.7 bits (73), Expect = 5.7
Identities = 44/163 (26%), Positives = 62/163 (37%), Gaps = 13/163 (7%)
Frame = +1
Query: 256 NKPRHPSHSVRAPRER--PASREICLSKRAPVHGCRRQSGYVSANTIETRGFRIHLLPTT 429
++ R P + R R R P +R S+ +PV R +S + + R R P T
Sbjct: 1814 SRSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS---RTSPVTRRRSRSRTSPVT 1870
Query: 430 QTASPTRTASSH-----------PNRAVRSRLTPQTTRRSRSPCYPAP*QRCSLRWNPPQ 576
+ S +RT + P + RSR RRSRS A + SL +PP
Sbjct: 1871 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPA 1930
Query: 577 QNQFPGEPFSVDRTGK*HETSRRNRVFSRFSPDFLLRRRWRIF 705
+ S DR+ + RN SR P L R F
Sbjct: 1931 IRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCF 1973
Score = 32.7 bits (73), Expect = 5.7
Identities = 40/138 (28%), Positives = 58/138 (41%), Gaps = 18/138 (13%)
Frame = +1
Query: 211 ENQNQNKSQSHKQLFNKPRHPSHSVR----APRERPASREICLSKRAPVHGCRRQSGYVS 378
E +++S ++ + PR + S R +P+ R R S+R RR+ S
Sbjct: 1594 EPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGS 1653
Query: 379 ANTIETRGFRIHLLPTT----------QTASPTRTASSHPN---RAVRSRLTPQTTR-RS 516
+ + R R + SPTR SS + R RSR TP T+R RS
Sbjct: 1654 SQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSR-TPLTSRKRS 1712
Query: 517 RSPCYPAP*QRCSLRWNP 570
RS PAP +R R +P
Sbjct: 1713 RSRTSPAPWKRSRSRASP 1730
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,132,554
Number of Sequences: 1393205
Number of extensions: 14737569
Number of successful extensions: 54629
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 49493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54234
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
