Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002176A_C01 KMC002176A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189947.1| hypothetical protein; protein id: At3g43610.1 [... 83 3e-15
ref|NP_065194.1| tubulin, gamma complex associated protein 6; KI... 36 0.37
ref|XP_128272.3| similar to tubulin, gamma complex associated pr... 35 1.1
gb|AAB29613.1| E9L product [variola virus VAR, India-1967, Pepti... 32 5.3
pir||H72156 C9L protein - variola minor virus (strain Garcia-196... 32 5.3
>ref|NP_189947.1| hypothetical protein; protein id: At3g43610.1 [Arabidopsis thaliana]
gi|9967510|emb|CAC05635.1| putative protein [Arabidopsis
thaliana]
Length = 1120
Score = 82.8 bits (203), Expect = 3e-15
Identities = 48/121 (39%), Positives = 61/121 (49%)
Frame = -2
Query: 609 KVKDMMDLESVHMEYLADSLCICFMSDETKAVGNIIESILQCALDFRSCLTVGAWDTRSE 430
KVKDMMDLESVHM YL+++L +G T
Sbjct: 1025 KVKDMMDLESVHMAYLSEAL------------------------------RIGIQSTDRV 1054
Query: 429 QGNSLGRLSTINISQVLSIKQKFDRSLKELHFCYIREPKHGNLGLSRFWEFLNYNEYYSH 250
+S + IN SQ FD+ LKELH C++R PKHG GLSRFW++LN+N YYS
Sbjct: 1055 PNDSWTKTLGINTSQ------NFDKELKELHKCHLRSPKHGKYGLSRFWDYLNFNLYYSD 1108
Query: 249 V 247
+
Sbjct: 1109 I 1109
>ref|NP_065194.1| tubulin, gamma complex associated protein 6; KIAA1669 protein;
similar to Xenopus gamma-tubulin interacting protein
(yeast SPC98 homolog); gamma-tubulin complex component
[Homo sapiens] gi|20454925|sp|Q96RT7|GCP6_HUMAN
Gamma-tubulin complex component 6 (GCP-6)
gi|15076861|gb|AAK82968.1|AF272887_1 gamma-tubulin
complex component [Homo sapiens]
Length = 1819
Score = 36.2 bits (82), Expect = 0.37
Identities = 32/121 (26%), Positives = 50/121 (40%), Gaps = 4/121 (3%)
Frame = -2
Query: 606 VKDMMDLESVHMEYLADSLCICFMSDETKAVGNIIESILQCALDFRSCLTVGAWDTRSEQ 427
V D+ +++ H EYL ++ ++++ V N+I SI L FRS L AW
Sbjct: 1703 VGDLEEIQRAHAEYLHKAVFRGLLTEKAAPVMNVIHSIFSLVLKFRSQLISQAW---GPP 1759
Query: 426 GNSLGRLSTINISQVLSIKQKFDRSLKELHFCYIREPKHGNLG----LSRFWEFLNYNEY 259
G G ++Q ++ HF + K N G L F +N+N Y
Sbjct: 1760 GGPRG----AEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQPHLEDFLLRINFNNY 1815
Query: 258 Y 256
Y
Sbjct: 1816 Y 1816
>ref|XP_128272.3| similar to tubulin, gamma complex associated protein 6; KIAA1669
protein; similar to Xenopus gamma-tubulin interacting
protein (yeast SPC98 homolog); gamma-tubulin complex
component [Homo sapiens] [Mus musculus]
Length = 462
Score = 34.7 bits (78), Expect = 1.1
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = -2
Query: 606 VKDMMDLESVHMEYLADSLCICFMSDETKAVGNIIESILQCALDFRSCLTVGAWDTRSEQ 427
V D+ +++ H EYL ++ ++++ V NII SI L FRS L W
Sbjct: 346 VGDLEEIQRAHAEYLHRAVFRGLLTEKAAPVMNIIHSIFSLVLKFRSQLISQNW------ 399
Query: 426 GNSLGRLSTINISQVLSIKQKFDRSLKELHFCYIREPKHGNLG----LSRFWEFLNYNEY 259
G + G + + L ++Q + HF + K N G L F +N+N Y
Sbjct: 400 GPATGPRGAEHPNFPL-MQQSYSTFKYYSHFLFKVVTKLVNRGYQPHLEDFLLRINFNNY 458
Query: 258 Y 256
Y
Sbjct: 459 Y 459
>gb|AAB29613.1| E9L product [variola virus VAR, India-1967, Peptide, 1005 aa]
Length = 1005
Score = 32.3 bits (72), Expect = 5.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 417 LGRLSTINISQVLSIKQKF-DRSLKELHFCYIREPKHGNLGLSRFWEFLNYNEYYSHVSN 241
+G++ TI+I + +S DR I EPK N+ + EFLN + +Y +SN
Sbjct: 60 MGKMRTIDIDETISYNLDIKDRKCSVADMWLIEEPKKRNIQNATMDEFLNISWFY--ISN 117
Query: 240 GM 235
G+
Sbjct: 118 GI 119
>pir||H72156 C9L protein - variola minor virus (strain Garcia-1966)
gi|5830611|emb|CAB54650.1| C9L protein [Variola minor
virus]
Length = 1005
Score = 32.3 bits (72), Expect = 5.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 417 LGRLSTINISQVLSIKQKF-DRSLKELHFCYIREPKHGNLGLSRFWEFLNYNEYYSHVSN 241
+G++ TI+I + +S DR I EPK N+ + EFLN + +Y +SN
Sbjct: 60 MGKMRTIDIDETISYNLDIKDRKCSVADMWLIEEPKKRNIQNATMDEFLNISWFY--ISN 117
Query: 240 GM 235
G+
Sbjct: 118 GI 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,994,264
Number of Sequences: 1393205
Number of extensions: 10648821
Number of successful extensions: 22234
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22225
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
