Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002173A_C01 KMC002173A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565187.1| expressed protein; protein id: At1g78700.1, sup... 88 1e-24
dbj|BAB33003.1| P0489A05.26 [Oryza sativa (japonica cultivar-gro... 69 5e-20
ref|NP_193624.1| putative protein; protein id: At4g18890.1, supp... 65 2e-18
ref|NP_565099.1| expressed protein; protein id: At1g75080.1, sup... 40 0.023
gb|AAL57684.1| At1g75080/F9E10_7 [Arabidopsis thaliana] gi|20147... 40 0.023
>ref|NP_565187.1| expressed protein; protein id: At1g78700.1, supported by cDNA:
gi_15215801, supported by cDNA: gi_19699251 [Arabidopsis
thaliana] gi|25352556|pir||H96815 hypothetical protein
F9K20.26 [imported] - Arabidopsis thaliana
gi|3834322|gb|AAC83038.1| EST gb|R30300 comes from this
gene. [Arabidopsis thaliana] gi|15215802|gb|AAK91446.1|
At1g78700/F9K20_26 [Arabidopsis thaliana]
gi|19699252|gb|AAL90992.1| At1g78700/F9K20_26
[Arabidopsis thaliana]
Length = 325
Score = 87.8 bits (216), Expect(2) = 1e-24
Identities = 45/66 (68%), Positives = 51/66 (77%), Gaps = 5/66 (7%)
Frame = -3
Query: 595 NPFGFKDEVFV----GSGSRMWTPGQSGTCSAAIAAGSDHTADIPMAEAVS-DEFAFGSS 431
NPFGFK+E G GSRMWTPGQSGTCS AI G+D TAD+PM+EAV+ EFAFGS+
Sbjct: 234 NPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAFGSN 293
Query: 430 TAGLVK 413
T GLVK
Sbjct: 294 TNGLVK 299
Score = 47.4 bits (111), Expect(2) = 1e-24
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1
Query: 408 WEGERIHEDCGSDDLELTLGSSKTQ 334
WEGERIHE+ GSDDLELTLG+S T+
Sbjct: 301 WEGERIHEESGSDDLELTLGNSSTR 325
>dbj|BAB33003.1| P0489A05.26 [Oryza sativa (japonica cultivar-group)]
Length = 354
Score = 68.6 bits (166), Expect(2) = 5e-20
Identities = 40/61 (65%), Positives = 44/61 (71%), Gaps = 2/61 (3%)
Frame = -3
Query: 598 SNPFG-FKDEVFVGSGS-RMWTPGQSGTCSAAIAAGSDHTADIPMAEAVSDEFAFGSSTA 425
SNPF FKD + VG+ S RM TPGQSGTCS AI + H DI M +AVSDEFAFGSST
Sbjct: 257 SNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHP-DIHMMDAVSDEFAFGSSTN 315
Query: 424 G 422
G
Sbjct: 316 G 316
Score = 50.8 bits (120), Expect(2) = 5e-20
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -1
Query: 408 WEGERIHEDCGSDDLELTLGSSKTQ 334
WEGERIHED GSDDLELTLGSS+T+
Sbjct: 327 WEGERIHEDSGSDDLELTLGSSRTR 351
>ref|NP_193624.1| putative protein; protein id: At4g18890.1, supported by cDNA: 6321.
[Arabidopsis thaliana] gi|7485425|pir||T05026
hypothetical protein F13C5.60 - Arabidopsis thaliana
gi|2832617|emb|CAA16746.1| putative protein [Arabidopsis
thaliana] gi|7268683|emb|CAB78891.1| putative protein
[Arabidopsis thaliana] gi|21594000|gb|AAM65918.1|
unknown [Arabidopsis thaliana]
gi|26452712|dbj|BAC43438.1| unknown protein [Arabidopsis
thaliana]
Length = 284
Score = 65.5 bits (158), Expect(2) = 2e-18
Identities = 34/66 (51%), Positives = 43/66 (64%), Gaps = 4/66 (6%)
Frame = -3
Query: 595 NPFGFKDEVFVGS-GSRMWTPGQSGTCSAAIAAGSDHTADIPMAEAVSDEFAFGSSTA-- 425
NPF K+ +G S MWTPGQSG CS AI AG D +D+PMA+ ++ EFAFG +
Sbjct: 194 NPFFDKEAFKMGDCNSPMWTPGQSGNCSPAIPAGVDQNSDVPMADGMTAEFAFGCNAMAA 253
Query: 424 -GLVKP 410
G+VKP
Sbjct: 254 NGMVKP 259
Score = 48.5 bits (114), Expect(2) = 2e-18
Identities = 20/26 (76%), Positives = 24/26 (91%)
Frame = -1
Query: 411 PWEGERIHEDCGSDDLELTLGSSKTQ 334
PWEGERIH +C SDDLELTLG+S+T+
Sbjct: 259 PWEGERIHGECVSDDLELTLGNSRTR 284
>ref|NP_565099.1| expressed protein; protein id: At1g75080.1, supported by cDNA:
33367., supported by cDNA: gi_18086460, supported by
cDNA: gi_20147314 [Arabidopsis thaliana]
gi|20270971|gb|AAM18490.1|AF494338_1 BZR1 protein
[Arabidopsis thaliana] gi|21592862|gb|AAM64812.1|
unknown [Arabidopsis thaliana]
Length = 336
Score = 40.0 bits (92), Expect = 0.023
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -1
Query: 411 PWEGERIHEDCGSDDLELTLGSSKTQ 334
PWEGERIH D G +DLELTLG+ K +
Sbjct: 311 PWEGERIH-DVGMEDLELTLGNGKAR 335
>gb|AAL57684.1| At1g75080/F9E10_7 [Arabidopsis thaliana] gi|20147315|gb|AAM10371.1|
At1g75080/F9E10_7 [Arabidopsis thaliana]
Length = 336
Score = 40.0 bits (92), Expect = 0.023
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -1
Query: 411 PWEGERIHEDCGSDDLELTLGSSKTQ 334
PWEGERIH D G +DLELTLG+ K +
Sbjct: 311 PWEGERIH-DVGMEDLELTLGNGKAR 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,229,784
Number of Sequences: 1393205
Number of extensions: 11827709
Number of successful extensions: 36205
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36153
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
