Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002166A_C01 KMC002166A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_045971.1| GvpC [Halobacterium sp. NRC-1] gi|16120004|ref|... 36 0.20
ref|NP_056178.2| zinc finger, imprinted 2 [Homo sapiens] gi|1149... 36 0.27
dbj|BAB85588.1| zinc finger protein [Homo sapiens] 36 0.27
gb|AAG35741.1|AF208969_1 Kruppel-type zinc finger protein [Homo ... 36 0.27
gb|AAB50011.1| PEG3 [Homo sapiens] gi|3962499|gb|AAC83176.1| PEG... 36 0.27
>ref|NP_045971.1| GvpC [Halobacterium sp. NRC-1] gi|16120004|ref|NP_395592.1| GvpC
protein, cluster A; GvpC1 [Halobacterium sp. NRC-1]
gi|121867|sp|P24574|GVC1_HALN1 Gas vesicle protein C 1
gi|81047|pir||JQ1122 gas-vesicle protein gvpC -
Halobacterium salinarum plasmids pHH1 and pNRC100
gi|7484020|pir||T08243 gas-vesicle operon protein gvpC -
Halobacterium sp. (strain NRC-1) plasmid pNRC100
gi|43531|emb|CAA40451.1| gvpC [Halobacterium salinarum]
gi|43654|emb|CAA45981.1| p-gvpC [Halobacterium
salinarum] gi|150418|gb|AAA98197.1| gas vesicle protein
[Halobacterium salinarum] gi|2822304|gb|AAC82810.1| GvpC
[Halobacterium sp. NRC-1] gi|10584094|gb|AAG20727.1|
GvpC protein, cluster A; GvpC1 [Halobacterium sp. NRC-1]
Length = 382
Score = 36.2 bits (82), Expect = 0.20
Identities = 25/82 (30%), Positives = 41/82 (49%), Gaps = 1/82 (1%)
Frame = -2
Query: 447 ELEAAQGSG-AQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNA 271
E+ A +G+ A+ P A +AEA +P+E G E E P +++ PEV
Sbjct: 254 EITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEPA-EVETAAPEVEG 312
Query: 270 TDGDGHDEAKIVDSTKEKNEES 205
+ D DEA+ ++ +E EE+
Sbjct: 313 SPADTADEAEDTEAEEETEEEA 334
>ref|NP_056178.2| zinc finger, imprinted 2 [Homo sapiens]
gi|11494020|gb|AAG35739.1|AF208967_1 Kruppel-type zinc
finger protein [Homo sapiens]
gi|11494022|gb|AAG35740.1|AF208968_1 Kruppel-type zinc
finger protein [Homo sapiens]
gi|11494026|gb|AAG35742.1|AF208970_1 Kruppel-type zinc
finger protein [Homo sapiens] gi|11991779|gb|AAG42324.1|
paternally expressed gene 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 35.8 bits (81), Expect = 0.27
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 441 EAAQGSGAQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDG 262
EA Q +G + PN D + D +++P ER E EG K++ PE +A +
Sbjct: 1435 EAGQPNGEAEQPNGDADEPDGAGIEDPEERAEEPEG------------KAEEPEGDADEP 1482
Query: 261 DG 256
DG
Sbjct: 1483 DG 1484
>dbj|BAB85588.1| zinc finger protein [Homo sapiens]
Length = 1308
Score = 35.8 bits (81), Expect = 0.27
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 441 EAAQGSGAQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDG 262
EA Q +G + PN D + D +++P ER E EG K++ PE +A +
Sbjct: 1155 EAGQPNGEAEQPNGDADEPDGAGIEDPEERAEEPEG------------KAEEPEGDADEP 1202
Query: 261 DG 256
DG
Sbjct: 1203 DG 1204
>gb|AAG35741.1|AF208969_1 Kruppel-type zinc finger protein [Homo sapiens]
gi|11991780|gb|AAG42325.1| paternally expressed gene 3
isoform 2 [Homo sapiens]
Length = 1462
Score = 35.8 bits (81), Expect = 0.27
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 441 EAAQGSGAQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDG 262
EA Q +G + PN D + D +++P ER E EG K++ PE +A +
Sbjct: 1309 EAGQPNGEAEQPNGDADEPDGAGIEDPEERAEEPEG------------KAEEPEGDADEP 1356
Query: 261 DG 256
DG
Sbjct: 1357 DG 1358
>gb|AAB50011.1| PEG3 [Homo sapiens] gi|3962499|gb|AAC83176.1| PEG3 [Homo sapiens]
Length = 615
Score = 35.8 bits (81), Expect = 0.27
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 441 EAAQGSGAQQPPNADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDG 262
EA Q +G + PN D + D +++P ER E EG K++ PE +A +
Sbjct: 462 EAGQPNGEAEQPNGDADEPDGAGIEDPEERAEEPEG------------KAEEPEGDADEP 509
Query: 261 DG 256
DG
Sbjct: 510 DG 511
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,324,466
Number of Sequences: 1393205
Number of extensions: 8508488
Number of successful extensions: 29669
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 28247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29568
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
