Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002157A_C03 KMC002157A_c03
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568395.1| putative protein; protein id: At5g20520.1, supp... 96 2e-19
ref|NP_014079.1| Hypothetical ORF; Ynl320wp [Saccharomyces cerev... 45 5e-04
ref|NP_477372.1| CG18642-PA [Drosophila melanogaster] gi|3329475... 40 0.015
ref|XP_225044.1| similar to hypothetical protein FLJ14906 [Homo ... 39 0.057
dbj|BAB23280.1| unnamed protein product [Mus musculus] 39 0.057
>ref|NP_568395.1| putative protein; protein id: At5g20520.1, supported by cDNA:
36716., supported by cDNA: gi_19347880, supported by
cDNA: gi_21280814 [Arabidopsis thaliana]
gi|19347881|gb|AAL85997.1| unknown protein [Arabidopsis
thaliana] gi|21280815|gb|AAM45057.1| unknown protein
[Arabidopsis thaliana] gi|21593162|gb|AAM65111.1|
unknown [Arabidopsis thaliana]
Length = 308
Score = 96.3 bits (238), Expect = 2e-19
Identities = 39/62 (62%), Positives = 51/62 (81%)
Frame = -1
Query: 562 DEMIPPSHMQMLYAKAATHNNQCLFVEFPTGMHMDTWMTGGDRYWSTVREFLEQHVPETK 383
DEM+PP HM+MLYAKAA N QC FVEFP+GMHMDTW++GG+ YW T +FLE++ PE +
Sbjct: 243 DEMVPPFHMKMLYAKAAARNPQCTFVEFPSGMHMDTWLSGGEVYWKTNLQFLEKYAPEKR 302
Query: 382 ED 377
++
Sbjct: 303 KE 304
>ref|NP_014079.1| Hypothetical ORF; Ynl320wp [Saccharomyces cerevisiae]
gi|1176584|sp|P42840|YN60_YEAST HYPOTHETICAL 32.3 KDA
PROTEIN IN KRE1-HXT14 INTERGENIC REGION
gi|1077427|pir||S51294 probable membrane protein YNL320w
- yeast (Saccharomyces cerevisiae)
gi|633665|emb|CAA86377.1| NO342 [Saccharomyces
cerevisiae] gi|1302432|emb|CAA96251.1| ORF YNL320w
[Saccharomyces cerevisiae]
Length = 284
Score = 45.4 bits (106), Expect = 5e-04
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = -1
Query: 562 DEMIPPSHMQMLYAKAATHNNQCLFVEFPTGMHMDTWMTGGDRYWSTVREFL 407
DE++PP HM+ LY + N + EFP G H DT + G YW +R+FL
Sbjct: 231 DEIVPPFHMRKLYETCPSSNKK--IFEFPLGSHNDTIIQDG--YWDIIRDFL 278
>ref|NP_477372.1| CG18642-PA [Drosophila melanogaster] gi|3329475|gb|AAC26858.1|
Bem46-like protein [Drosophila melanogaster]
gi|7295869|gb|AAF51169.1| CG18642-PA [Drosophila
melanogaster]
Length = 338
Score = 40.4 bits (93), Expect = 0.015
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 562 DEMIPPSHMQMLYAKAATHNNQCLFVEFPTGMHMDTWMTGGDRYWSTVREFLEQ 401
D ++PP M+ LY K + + L EFP G H DTW+ G Y+ + FL +
Sbjct: 263 DNLVPPRMMRALYTKCGSEIKRLL--EFPGGSHNDTWIVDG--YYQAIGGFLAE 312
>ref|XP_225044.1| similar to hypothetical protein FLJ14906 [Homo sapiens] [Rattus
norvegicus]
Length = 898
Score = 38.5 bits (88), Expect = 0.057
Identities = 22/69 (31%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Frame = -1
Query: 562 DEMIPPSHMQMLYAKAATHNNQCLFVEFPTGMHMDTWMTGGDRYWSTVREFLEQ----HV 395
D++IPP M+ LY + + + FP G H DTW G Y++ + +F+++ H
Sbjct: 829 DQLIPPVMMKQLYELSPSRTKRLAI--FPDGTHNDTWQCQG--YFTALEQFIKEVIKSHS 884
Query: 394 PETKEDGSS 368
PE SS
Sbjct: 885 PEDMTKTSS 893
>dbj|BAB23280.1| unnamed protein product [Mus musculus]
Length = 161
Score = 38.5 bits (88), Expect = 0.057
Identities = 22/69 (31%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Frame = -1
Query: 562 DEMIPPSHMQMLYAKAATHNNQCLFVEFPTGMHMDTWMTGGDRYWSTVREFLEQ----HV 395
D++IPP M+ LY + + + FP G H DTW G Y++ + +F+++ H
Sbjct: 92 DQLIPPVMMKQLYELSPSRTKRLAI--FPDGTHNDTWQCQG--YFTALEQFIKEVIKSHS 147
Query: 394 PETKEDGSS 368
PE SS
Sbjct: 148 PEDMTKTSS 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,442,485
Number of Sequences: 1393205
Number of extensions: 11000847
Number of successful extensions: 29416
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 23563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27095
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
