Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002156A_C01 KMC002156A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00001684.1| hypothetical protein [Ferroplasma acidarmanus] 35 0.28
gb|EAA14252.1| agCP8763 [Anopheles gambiae str. PEST] 33 1.0
ref|NP_496960.1| Major sperm protein family member [Caenorhabdit... 33 1.8
ref|NP_610342.1| CG11198-PA [Drosophila melanogaster] gi|2162774... 32 4.0
ref|NP_571590.1| spondin 1a [Danio rerio] gi|2529225|dbj|BAA2281... 32 4.0
>gb|ZP_00001684.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 230
Score = 35.4 bits (80), Expect = 0.28
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 388 LITNYFQQEKTKSDKPETCDDDHTSEIEPSGAEHE 284
L+TN+ + KS+KP DD+ +E+E AEHE
Sbjct: 196 LLTNFLTKRSAKSNKPAEKDDEIDAELEKRNAEHE 230
>gb|EAA14252.1| agCP8763 [Anopheles gambiae str. PEST]
Length = 380
Score = 33.5 bits (75), Expect = 1.0
Identities = 29/88 (32%), Positives = 41/88 (45%), Gaps = 7/88 (7%)
Frame = -2
Query: 394 LSLITNY---FQQEKTKSDKPETCDDDHTSEIEPSGAEHEAVPIWLHSSNVAVQSSQNAT 224
++ + NY F +KTK+D E +D + + IE S H S ++SS N T
Sbjct: 41 ITYLANYLFNFANQKTKTDHKEVDNDSNNNLIEGSVR---------HPSEKELESSSNQT 91
Query: 223 APDLELTLAAP-KVMMLEQN---ESSPA 152
A LE AP V +E N ES P+
Sbjct: 92 AAVLETVAQAPVPVQPMEPNVREESQPS 119
>ref|NP_496960.1| Major sperm protein family member [Caenorhabditis elegans]
gi|7509980|pir||T26997 hypothetical protein Y48B6A.5 -
Caenorhabditis elegans gi|5824798|emb|CAB54441.1|
Hypothetical protein Y48B6A.5 [Caenorhabditis elegans]
Length = 424
Score = 32.7 bits (73), Expect = 1.8
Identities = 25/101 (24%), Positives = 50/101 (48%), Gaps = 15/101 (14%)
Frame = -2
Query: 406 NDATLSLITN---------YFQQEKTKSDKPETCDDDHTSEIEPSG-AEHEAVPIWLHSS 257
N AT+ ++T+ ++QQ ++ +P + H S++E + E P+ + ++
Sbjct: 180 NQATVEMLTSVYTRYDSQGFYQQTESSGFEPRSPTITHFSDVESEYMVDMEQEPLDVSTA 239
Query: 256 -----NVAVQSSQNATAPDLELTLAAPKVMMLEQNESSPAA 149
++A+Q++QN + PD AAPK LE+ P +
Sbjct: 240 VSFLPSLAMQTTQNVS-PDYVYNTAAPKTEPLEEESVEPCS 279
>ref|NP_610342.1| CG11198-PA [Drosophila melanogaster] gi|21627749|gb|AAF59155.2|
CG11198-PA [Drosophila melanogaster]
Length = 2482
Score = 31.6 bits (70), Expect = 4.0
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -2
Query: 373 FQQEKTKSDKPETCDDDHTSEIEPSGAEHEAVPIWLHSSNVAVQSSQNATAPDLELTLAA 194
F E +SD E CD S + ++ + +++N ++ +QN + D+ ++++
Sbjct: 100 FSSESLRSDVDELCDQLKDSALSNLSNDNIRIACHQNNNNSSINKNQNNNSIDISISIS- 158
Query: 193 PKVMMLEQNESSPAA 149
M E NES+ A
Sbjct: 159 ---KMSETNESNDTA 170
>ref|NP_571590.1| spondin 1a [Danio rerio] gi|2529225|dbj|BAA22810.1| F-spondin1
[Danio rerio]
Length = 808
Score = 31.6 bits (70), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 430 KGSKCEVGNDATLSLITNYFQQEKTKSDKPETC 332
KG +C + D ++ + Q+EK + D PETC
Sbjct: 411 KGEQCNIVPDNVDDIVADIAQEEKEEDDTPETC 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,956,192
Number of Sequences: 1393205
Number of extensions: 7722214
Number of successful extensions: 17560
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17546
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
