Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002143A_C01 KMC002143A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200034.1| GTP-binding protein-like; protein id: At5g52210... 91 1e-17
gb|AAM62873.1| GTP-binding protein-like [Arabidopsis thaliana] 89 3e-17
dbj|BAC10177.1| similar to GTP-binding protein [Oryza sativa (ja... 74 1e-12
pir||T02868 probable GTP-binding protein - rice gi|2961178|gb|AA... 66 3e-10
ref|XP_217704.1| similar to pogo transposable element with ZNF d... 35 0.57
>ref|NP_200034.1| GTP-binding protein-like; protein id: At5g52210.2, supported by
cDNA: 16621., supported by cDNA: gi_1184980 [Arabidopsis
thaliana] gi|2129607|pir||S71584 GTP-binding protein BG1
- Arabidopsis thaliana gi|1184981|gb|AAA87882.1|
GTP-binding protein ATGB1 [Arabidopsis thaliana]
gi|8885534|dbj|BAA97464.1| GTP-binding protein-like
[Arabidopsis thaliana] gi|28416611|gb|AAO42836.1|
At5g52210 [Arabidopsis thaliana]
Length = 205
Score = 90.5 bits (223), Expect = 1e-17
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = -3
Query: 534 TAEELARYLDLKKLDERLFMFEAVSAYDGLGIRESAEWLVQVMDRSKRTEMLRERAG 364
+AEEL RYLDLKKLDER++MFEAVS YDG GI+ES EWLV VM++SKRTE LR RAG
Sbjct: 142 SAEELDRYLDLKKLDERVYMFEAVSGYDGRGIKESIEWLVGVMEKSKRTESLRARAG 198
>gb|AAM62873.1| GTP-binding protein-like [Arabidopsis thaliana]
Length = 205
Score = 89.4 bits (220), Expect = 3e-17
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = -3
Query: 534 TAEELARYLDLKKLDERLFMFEAVSAYDGLGIRESAEWLVQVMDRSKRTEMLRERAG 364
+AEEL RYLDLKKLD+R++MFEAVS YDG GI+ES EWLV VM++SKRTE LR RAG
Sbjct: 142 SAEELDRYLDLKKLDDRVYMFEAVSGYDGRGIKESIEWLVGVMEKSKRTESLRARAG 198
>dbj|BAC10177.1| similar to GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 265
Score = 73.6 bits (179), Expect = 1e-12
Identities = 37/62 (59%), Positives = 46/62 (73%)
Frame = -3
Query: 534 TAEELARYLDLKKLDERLFMFEAVSAYDGLGIRESAEWLVQVMDRSKRTEMLRERAGAMG 355
T EELAR+L LK LDER +MF+A SAYDG GI+ +WLV+ M+RSKRTE+L R A+
Sbjct: 188 TEEELARHLHLKGLDERPYMFQAGSAYDGTGIKAGIDWLVEEMERSKRTEVLMARFAAVH 247
Query: 354 SG 349
G
Sbjct: 248 LG 249
>pir||T02868 probable GTP-binding protein - rice gi|2961178|gb|AAC05675.1|
GTP-binding protein [Oryza sativa]
Length = 203
Score = 65.9 bits (159), Expect = 3e-10
Identities = 32/55 (58%), Positives = 41/55 (74%)
Frame = -3
Query: 534 TAEELARYLDLKKLDERLFMFEAVSAYDGLGIRESAEWLVQVMDRSKRTEMLRER 370
T E+LAR+L LK LDE +MF+ SAYDG GI+ +WLV+ M+RSKRTE+L R
Sbjct: 142 TEEKLARHLPLKGLDESPYMFQGGSAYDGTGIKGGIDWLVEEMERSKRTEVLMAR 196
>ref|XP_217704.1| similar to pogo transposable element with ZNF domain isoform 1
[Homo sapiens] [Rattus norvegicus]
Length = 496
Score = 35.0 bits (79), Expect = 0.57
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +1
Query: 358 HCPCPLSQHFSPLASVHNLHQPFSTFPNTQPIIC*NGFKHEKSFIQ 495
HC C S HF V N+H P+ + T+ IC F+ + F+Q
Sbjct: 163 HCDCQFSTHFQLQCHVENVHTPYES--TTKCKICEGAFESQSLFLQ 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,603,237
Number of Sequences: 1393205
Number of extensions: 9048123
Number of successful extensions: 20345
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20264
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
