Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002141A_C01 KMC002141A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172731.1| hypothetical protein; protein id: At1g12710.1 [... 238 5e-62
ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabi... 231 8e-60
gb|AAK59472.2| unknown protein [Arabidopsis thaliana] 224 9e-58
pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thalia... 224 9e-58
ref|NP_567108.1| putative protein; protein id: At3g61060.1, supp... 208 5e-53
>ref|NP_172731.1| hypothetical protein; protein id: At1g12710.1 [Arabidopsis
thaliana] gi|9502385|gb|AAF88092.1|AC025417_20 T12C24.23
[Arabidopsis thaliana] gi|26450401|dbj|BAC42315.1|
unknown protein [Arabidopsis thaliana]
gi|28827596|gb|AAO50642.1| unknown protein [Arabidopsis
thaliana]
Length = 291
Score = 238 bits (608), Expect = 5e-62
Identities = 110/179 (61%), Positives = 135/179 (74%)
Frame = +3
Query: 177 VSPSFGELPESCVALILGYADPPQICQLATLNRAFRAASSADFVWESKLPANYRAIVRKI 356
+ P G+LPE+CVA+I+ DP +IC+ + LNRAFR AS AD VWESKLP NYR ++ KI
Sbjct: 24 LKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKI 83
Query: 357 FTDFPSDSSKRDTYAALCRLNTLDGGTKKAWLDKSTGKICMCLSFKGLSITGIDDRRYWK 536
FP + KR YA L R+N+ D TKK W+DK T +C+ +S KGLSITGIDDRRYW
Sbjct: 84 LGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWS 143
Query: 537 DIHTEESRFGTVAYLQQTWWFQVDGEVEFPFPAGTYSLFFRLHLGRASKGRFGRRLCNT 713
I T+ESRF +VAYLQQ WWF+VDGE++FPFP GTYS+FFRL LGR+ K FGRR+CNT
Sbjct: 144 HIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKW-FGRRVCNT 201
>ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabidopsis thaliana]
gi|25366248|pir||C96656 unknown protein, 43836-42510
[imported] - Arabidopsis thaliana
gi|12323246|gb|AAG51598.1|AC010795_2 unknown protein;
43836-42510 [Arabidopsis thaliana]
Length = 289
Score = 231 bits (589), Expect = 8e-60
Identities = 107/179 (59%), Positives = 135/179 (74%)
Frame = +3
Query: 177 VSPSFGELPESCVALILGYADPPQICQLATLNRAFRAASSADFVWESKLPANYRAIVRKI 356
+ P G+LPESCVALIL DP +IC+ + LN AF AS ADFVWESKLP +Y+ I+ KI
Sbjct: 22 LQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKI 81
Query: 357 FTDFPSDSSKRDTYAALCRLNTLDGGTKKAWLDKSTGKICMCLSFKGLSITGIDDRRYWK 536
FP + KRD + L R+N+ D G KKAW+DK TG +C+C S KGLSITGIDDRRYW
Sbjct: 82 LGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWS 141
Query: 537 DIHTEESRFGTVAYLQQTWWFQVDGEVEFPFPAGTYSLFFRLHLGRASKGRFGRRLCNT 713
I +++SRF +VAY+QQ WWFQVDGE++FPFPAGTYS++FRL LG+ K RFG ++ +T
Sbjct: 142 HIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGK-RFGWKVVDT 199
>gb|AAK59472.2| unknown protein [Arabidopsis thaliana]
Length = 269
Score = 224 bits (571), Expect = 9e-58
Identities = 105/174 (60%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Frame = +3
Query: 195 ELPESCVALILGYADPPQICQLATLNRAFRAASSADFVWESKLPANYRAIVRKIFTDFP- 371
+LPE+CVALI+ DPP+IC+LA LNR FR ASSADF+WESKLPANYR I K+F +
Sbjct: 6 DLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITL 65
Query: 372 SDSSKRDTYAALCRLNTLDGGTKKAWLDKSTGKICMCLSFKGLSITGIDDRRYWKDIHTE 551
+ K+D YA L + N D GTK+ W+DK+TG++C+ +S K L ITGIDDRRYW I T+
Sbjct: 66 TKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTD 125
Query: 552 ESRFGTVAYLQQTWWFQVDGEVEFPFPAGTYSLFFRLHLGRASKGRFGRRLCNT 713
ESRF + AY+QQ WWF+V GE E FP+GTYSLFFR+ LG+ SK R GRR+CN+
Sbjct: 126 ESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSK-RLGRRICNS 178
>pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thaliana
gi|8388622|emb|CAB94142.1| putative protein [Arabidopsis
thaliana] gi|24030237|gb|AAN41295.1| unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 224 bits (571), Expect = 9e-58
Identities = 105/174 (60%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Frame = +3
Query: 195 ELPESCVALILGYADPPQICQLATLNRAFRAASSADFVWESKLPANYRAIVRKIFTDFP- 371
+LPE+CVALI+ DPP+IC+LA LNR FR ASSADF+WESKLPANYR I K+F +
Sbjct: 27 DLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITL 86
Query: 372 SDSSKRDTYAALCRLNTLDGGTKKAWLDKSTGKICMCLSFKGLSITGIDDRRYWKDIHTE 551
+ K+D YA L + N D GTK+ W+DK+TG++C+ +S K L ITGIDDRRYW I T+
Sbjct: 87 TKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTD 146
Query: 552 ESRFGTVAYLQQTWWFQVDGEVEFPFPAGTYSLFFRLHLGRASKGRFGRRLCNT 713
ESRF + AY+QQ WWF+V GE E FP+GTYSLFFR+ LG+ SK R GRR+CN+
Sbjct: 147 ESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSK-RLGRRICNS 199
>ref|NP_567108.1| putative protein; protein id: At3g61060.1, supported by cDNA:
gi_14334587 [Arabidopsis thaliana]
Length = 254
Score = 208 bits (530), Expect = 5e-53
Identities = 97/160 (60%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Frame = +3
Query: 237 DPPQICQLATLNRAFRAASSADFVWESKLPANYRAIVRKIFTDFP-SDSSKRDTYAALCR 413
DPP+IC+LA LNR FR ASSADF+WESKLPANYR I K+F + + K+D YA L +
Sbjct: 5 DPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQ 64
Query: 414 LNTLDGGTKKAWLDKSTGKICMCLSFKGLSITGIDDRRYWKDIHTEESRFGTVAYLQQTW 593
N D GTK+ W+DK+TG++C+ +S K L ITGIDDRRYW I T+ESRF + AY+QQ W
Sbjct: 65 PNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIW 124
Query: 594 WFQVDGEVEFPFPAGTYSLFFRLHLGRASKGRFGRRLCNT 713
WF+V GE E FP+GTYSLFFR+ LG+ SK R GRR+CN+
Sbjct: 125 WFEVGGEFEIQFPSGTYSLFFRIQLGKTSK-RLGRRICNS 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,458,064
Number of Sequences: 1393205
Number of extensions: 17585364
Number of successful extensions: 71675
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 62115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71082
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
