Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002137A_C01 KMC002137A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197483.1| putative protein; protein id: At5g19820.1, supp... 49 3e-05
gb|AAL83632.1|AC093017_16 putative Ran binding protein [Oryza sa... 42 0.003
ref|NP_810564.1| pyrophosphorylase [Bacteroides thetaiotaomicron... 33 2.6
gb|AAN64385.1| G protein-coupled receptor MrgC11 [Mus musculus] 32 5.8
gb|ZP_00095808.1| hypothetical protein [Novosphingobium aromatic... 32 5.8
>ref|NP_197483.1| putative protein; protein id: At5g19820.1, supported by cDNA:
gi_14334741, supported by cDNA: gi_15293298 [Arabidopsis
thaliana] gi|14334742|gb|AAK59549.1| unknown protein
[Arabidopsis thaliana] gi|15293299|gb|AAK93760.1|
unknown protein [Arabidopsis thaliana]
Length = 1116
Score = 49.3 bits (116), Expect = 3e-05
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -3
Query: 453 KVWSIVDEIK*VIAASSNT---RTESAQAEDFYVE*VELVKKESEPGEDVFDQ 304
K+ SIVDEIK V+ ASS+ R E A AEDF E EL+K+E+E E++FDQ
Sbjct: 808 KIRSIVDEIKQVMTASSSRKRERGERAHAEDFDAEEGELIKEENEQEEEIFDQ 860
>gb|AAL83632.1|AC093017_16 putative Ran binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 1114
Score = 42.4 bits (98), Expect = 0.003
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -3
Query: 453 KVWSIVDEIK*VIAASS---NTRTESAQAEDFYVE*VELVKKESEPGEDVFDQ 304
+V SIVD IK VI AS+ RT+ A+AEDF E +L+++E+E +++FDQ
Sbjct: 805 QVRSIVDGIKEVITASALRRRERTDRAKAEDFDSEEEDLLREENEQEDEIFDQ 857
>ref|NP_810564.1| pyrophosphorylase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338959|gb|AAO76758.1| pyrophosphorylase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 453
Score = 32.7 bits (73), Expect = 2.6
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +2
Query: 242 NTAYQKKKTSLQHLNKSGNFH*SKTS------SPGSLSFLTSSTYST*KSSAWALSVLVL 403
N +Y+ S+ +N GN +K S S GSL F TSS+Y+ ++ S+
Sbjct: 323 NMSYEAVHQSID-VNYLGNIIVAKESFFYLKESKGSLLFFTSSSYTRGRA---LYSLYSS 378
Query: 404 ELAAITYFISSTMDQTFEVGSKKQCV 481
AAI F+ + ++ FE G + C+
Sbjct: 379 SKAAIVNFVQALSEEWFEYGIRVNCI 404
>gb|AAN64385.1| G protein-coupled receptor MrgC11 [Mus musculus]
Length = 322
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 109 KINSTILRSQQ*INCITLNDILSRIFPHQSVARLCPPR*YQLLWQHCLSKKKNFSATF-E 285
K++ IL + I I+ ILS I + + L P +W HC + +N SA
Sbjct: 96 KLSKDILGNAAIIPYISGLSILSAISTERCLCVLWP------IWYHC-HRPRNMSAIICA 148
Query: 286 QIWQLPLIENVFPWFTFLLNQFH 354
IW L + + WF+ L + H
Sbjct: 149 LIWVLSFLMGILDWFSGFLGETH 171
>gb|ZP_00095808.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 878
Score = 31.6 bits (70), Expect = 5.8
Identities = 20/72 (27%), Positives = 31/72 (42%)
Frame = -3
Query: 471 FLEPTSKVWSIVDEIK*VIAASSNTRTESAQAEDFYVE*VELVKKESEPGEDVFDQWKLP 292
F++ T+ + V + + AS E A+ F + E +PG VF+ W L
Sbjct: 541 FIKATAADYQHVRDARAGKGASKLLSLEDARLNAFSPDFSEKAPPPEQPGRHVFEDWDLT 600
Query: 291 DLFKCCREVFFF 256
DL +C FF
Sbjct: 601 DLVECFDWTPFF 612
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,391,911
Number of Sequences: 1393205
Number of extensions: 9240668
Number of successful extensions: 22347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22333
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
