Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002129A_C01 KMC002129A_c01
(705 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29828|PDI_MEDSA Protein disulfide isomerase precursor (PDI) ... 239 4e-62
pir||A41440 protein disulfide-isomerase (EC 5.3.4.1) precursor -... 236 2e-61
sp|Q43116|PDI_RICCO Protein disulfide isomerase precursor (PDI) ... 213 6e-56
sp|Q9XF61|PDI_DATGL Protein disulfide isomerase precursor (PDI) ... 214 9e-55
ref|NP_173594.1| putative protein disulfide isomerase precursor;... 200 2e-50
>sp|P29828|PDI_MEDSA Protein disulfide isomerase precursor (PDI) gi|68467|pir||ISAASS
protein disulfide-isomerase (EC 5.3.4.1) precursor
(clone L1) - alfalfa gi|19654|emb|CAA77575.1| protein
disulfide isomerase [Medicago sativa]
Length = 512
Score = 239 bits (609), Expect = 4e-62
Identities = 110/139 (79%), Positives = 127/139 (91%)
Frame = -1
Query: 702 DGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNHEPVKVVVGDSLQDVVFKSG 523
DGKKFFKP LE DQ+ +WLKAYKDG V P+VKSEPIPETN+EPVKVVVG +L+DVVFKSG
Sbjct: 336 DGKKFFKPNLELDQLPTWLKAYKDGKVEPFVKSEPIPETNNEPVKVVVGQTLEDVVFKSG 395
Query: 522 KNVLLEFYAPWCGHCQSLAPILDEVAVSYPNDADIVIAKSDATAHDVPTASFEVQGYPTL 343
KNVL+EFYAPWCGHC+ LAPILDEVAVS+ +DAD+VIAK DATA+D+PT +F+VQGYPTL
Sbjct: 396 KNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDATANDIPTDTFDVQGYPTL 455
Query: 342 YFISSSGKISPYDGGRTKE 286
YF S+SGK+S YDGGRTKE
Sbjct: 456 YFRSASGKLSQYDGGRTKE 474
Score = 60.8 bits (146), Expect = 2e-08
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = -1
Query: 516 VLLEFYAPWCGHCQSLAPILDEVA-VSYPNDADIVIAKSDAT-AHDVPTAS-FEVQGYPT 346
+++EFYAPWCGHC+ LAP ++ A + ++ +V+AK DA H+ AS +V+G+PT
Sbjct: 53 IVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVKGFPT 112
Query: 345 LYFISSSGK-ISPYDGGRTKERHHTFT*KQPG 253
+ + GK I Y G R E + KQ G
Sbjct: 113 IKIFRNGGKNIQEYKGPREAEGIVEYLKKQSG 144
>pir||A41440 protein disulfide-isomerase (EC 5.3.4.1) precursor - alfalfa (clone
B2) gi|166418|gb|AAA32662.1| putative endomembrane
protein; putative
Length = 512
Score = 236 bits (603), Expect = 2e-61
Identities = 109/139 (78%), Positives = 126/139 (90%)
Frame = -1
Query: 702 DGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNHEPVKVVVGDSLQDVVFKSG 523
DGKKFFKP LE DQ+ +WLKAYKDG V P+VKSEPIPETN+EPVKVVVG +L+DVVFKS
Sbjct: 336 DGKKFFKPNLELDQLPTWLKAYKDGKVEPFVKSEPIPETNNEPVKVVVGQTLEDVVFKSA 395
Query: 522 KNVLLEFYAPWCGHCQSLAPILDEVAVSYPNDADIVIAKSDATAHDVPTASFEVQGYPTL 343
KNVL+EFYAPWCGHC+ LAPILDEVAVS+ +DAD+VIAK DATA+D+PT +F+VQGYPTL
Sbjct: 396 KNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDATANDIPTDTFDVQGYPTL 455
Query: 342 YFISSSGKISPYDGGRTKE 286
YF S+SGK+S YDGGRTKE
Sbjct: 456 YFRSASGKLSQYDGGRTKE 474
Score = 60.8 bits (146), Expect = 2e-08
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = -1
Query: 516 VLLEFYAPWCGHCQSLAPILDEVA-VSYPNDADIVIAKSDAT-AHDVPTAS-FEVQGYPT 346
+++EFYAPWCGHC+ LAP ++ A + ++ +V+AK DA H+ AS +V+G+PT
Sbjct: 53 IVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVKGFPT 112
Query: 345 LYFISSSGK-ISPYDGGRTKERHHTFT*KQPG 253
+ + GK I Y G R E + KQ G
Sbjct: 113 IKIFRNGGKNIQEYKGPREAEGIVEYLKKQSG 144
>sp|Q43116|PDI_RICCO Protein disulfide isomerase precursor (PDI) gi|2146797|pir||S62626
protein disulfide-isomerase (EC 5.3.4.1) - castor bean
gi|1134968|gb|AAB05641.1| protein disulphide isomerase
PDI gi|1587210|prf||2206331A protein disulfide isomerase
Length = 498
Score = 213 bits (542), Expect(2) = 6e-56
Identities = 98/139 (70%), Positives = 118/139 (84%)
Frame = -1
Query: 702 DGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNHEPVKVVVGDSLQDVVFKSG 523
DG+K+ K LE D I+ W+KAYK+G V Y KSEPIPE N+EPVKVVV D+LQD+VF SG
Sbjct: 335 DGQKYLKANLEPDHIAPWVKAYKEGKVQAYRKSEPIPEVNNEPVKVVVADTLQDIVFNSG 394
Query: 522 KNVLLEFYAPWCGHCQSLAPILDEVAVSYPNDADIVIAKSDATAHDVPTASFEVQGYPTL 343
KNVLLEFYAPWCGHC+ LAPILDEVAVSY +DADIVIAK DATA+D+P+ +F+V+GYPT+
Sbjct: 395 KNVLLEFYAPWCGHCKQLAPILDEVAVSYKSDADIVIAKLDATANDIPSDTFDVRGYPTV 454
Query: 342 YFISSSGKISPYDGGRTKE 286
YF S+SGK+ YDG RTK+
Sbjct: 455 YFRSASGKVEQYDGDRTKD 473
Score = 62.4 bits (150), Expect = 6e-09
Identities = 33/92 (35%), Positives = 53/92 (56%), Gaps = 4/92 (4%)
Frame = -1
Query: 516 VLLEFYAPWCGHCQSLAPILDEVA-VSYPNDADIVIAKSDAT--AHDVPTASFEVQGYPT 346
+++EFYAPWCGHC+ L P ++ A + +D +V+AK DA A+ ++++G+PT
Sbjct: 52 IVVEFYAPWCGHCKKLRPEYEKAASILKSHDIPVVLAKVDANEEANKELATQYDIKGFPT 111
Query: 345 LYFISSSGK-ISPYDGGRTKERHHTFT*KQPG 253
L + + GK I Y G R + + KQ G
Sbjct: 112 LKILRNGGKSIQEYKGPREADGIAEYLKKQSG 143
Score = 26.9 bits (58), Expect(2) = 6e-56
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 290 RNDIIHSLENSRDKKSTQIEEETGKDEI 207
++DII +E +RDK + Q E GKDE+
Sbjct: 472 KDDIISFIEKNRDKAAQQ-ESANGKDEL 498
>sp|Q9XF61|PDI_DATGL Protein disulfide isomerase precursor (PDI)
gi|4704766|gb|AAD28260.1|AF131223_1 protein disulfide
isomerase homolog; PDI [Datisca glomerata]
Length = 507
Score = 214 bits (545), Expect = 9e-55
Identities = 99/139 (71%), Positives = 118/139 (84%)
Frame = -1
Query: 702 DGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNHEPVKVVVGDSLQDVVFKSG 523
DG K+ KP LE D I+SW+K YKD ++PY KSEPIPE N+EPVKVVV DSL ++VFKSG
Sbjct: 336 DGTKYLKPNLEPDHIASWVKEYKDCKLSPYRKSEPIPEHNNEPVKVVVADSLDEIVFKSG 395
Query: 522 KNVLLEFYAPWCGHCQSLAPILDEVAVSYPNDADIVIAKSDATAHDVPTASFEVQGYPTL 343
KNVLLEFYAPWCGHC+ LAPILDEVAVS+ ND D++IAK DATA+D PT +F+V+GYPTL
Sbjct: 396 KNVLLEFYAPWCGHCKQLAPILDEVAVSFENDPDVLIAKLDATANDYPTNTFDVKGYPTL 455
Query: 342 YFISSSGKISPYDGGRTKE 286
YF S+SG++ YDGGRTKE
Sbjct: 456 YFKSASGELLQYDGGRTKE 474
Score = 65.9 bits (159), Expect = 5e-10
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = -1
Query: 516 VLLEFYAPWCGHCQSLAPILDEVA-VSYPNDADIVIAKSDAT--AHDVPTASFEVQGYPT 346
+++EFYAPWCGHC+ LAP ++ A + +D +++AK DA A+ + FEV+G+PT
Sbjct: 53 IVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVILAKVDANEEANKELASEFEVRGFPT 112
Query: 345 LYFISSSGKI-SPYDGGRTKERHHTFT*KQPG 253
+ + + GKI Y G R + + KQ G
Sbjct: 113 IKILRNGGKIVQEYKGPRDADGIVDYLKKQSG 144
>ref|NP_173594.1| putative protein disulfide isomerase precursor; protein id:
At1g21750.1, supported by cDNA: gi_14334845, supported
by cDNA: gi_17104688 [Arabidopsis thaliana]
gi|11134225|sp|Q9XI01|PDI1_ARATH Probable protein
disulfide isomerase 1 precursor (PDI)
gi|25292645|pir||B86351 protein disulfide-isomerase (EC
5.3.4.1) precursor - Arabidopsis thaliana
gi|5263328|gb|AAD41430.1|AC007727_19 Similar to
gb|Z11499 protein disulfide isomerase from Medicago
sativa. ESTs gb|AI099693, gb|R65226, gb|AA657311,
gb|T43068, gb|T42754, gb|T14005, gb|T76445, gb|H36733,
gb|T43168 and gb|T20649 come from this gene.
[Arabidopsis thaliana] gi|14334846|gb|AAK59601.1|
putative protein disulfide isomerase precursor
[Arabidopsis thaliana] gi|17104689|gb|AAL34233.1|
putative protein disulfide isomerase precursor
[Arabidopsis thaliana]
Length = 501
Score = 200 bits (508), Expect = 2e-50
Identities = 93/147 (63%), Positives = 115/147 (77%)
Frame = -1
Query: 702 DGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNHEPVKVVVGDSLQDVVFKSG 523
D KK+ K +E DQI SW+K +KDG +AP+ KS+PIP N+EPVKVVV DSL D+V SG
Sbjct: 333 DDKKYLKTNVEVDQIESWVKDFKDGKIAPHKKSQPIPAENNEPVKVVVSDSLDDIVLNSG 392
Query: 522 KNVLLEFYAPWCGHCQSLAPILDEVAVSYPNDADIVIAKSDATAHDVPTASFEVQGYPTL 343
KNVLLEFYAPWCGHCQ LAPILDEVAVSY +D+ +VIAK DATA+D P +F+V+G+PT+
Sbjct: 393 KNVLLEFYAPWCGHCQKLAPILDEVAVSYQSDSSVVIAKLDATANDFPKDTFDVKGFPTI 452
Query: 342 YFISSSGKISPYDGGRTKERHHTFT*K 262
YF S+SG + Y+G RTKE +F K
Sbjct: 453 YFKSASGNVVVYEGDRTKEDFISFVDK 479
Score = 65.9 bits (159), Expect = 5e-10
Identities = 38/93 (40%), Positives = 55/93 (58%), Gaps = 5/93 (5%)
Frame = -1
Query: 516 VLLEFYAPWCGHCQSLAPILDEVAVSY-PNDADIVIAKSDA---TAHDVPTASFEVQGYP 349
+++EFYAPWCGHC+ LAP ++ A + N +V+AK DA T + T +EVQG+P
Sbjct: 50 IVVEFYAPWCGHCKQLAPEYEKAASALSSNVPPVVLAKIDASEETNREFAT-QYEVQGFP 108
Query: 348 TLYFISSSGK-ISPYDGGRTKERHHTFT*KQPG 253
T+ + GK + Y+G R E T+ KQ G
Sbjct: 109 TIKIFRNGGKAVQEYNGPREAEGIVTYLKKQSG 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,614,395
Number of Sequences: 1393205
Number of extensions: 12515989
Number of successful extensions: 40673
Number of sequences better than 10.0: 1044
Number of HSP's better than 10.0 without gapping: 38277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40217
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
