Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002108A_C01 KMC002108A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200111.1| putative protein; protein id: At5g52990.1 [Arab... 86 4e-16
gb|AAO42845.1| At5g52990 [Arabidopsis thaliana] 86 4e-16
ref|NP_194513.1| putative protein; protein id: At4g27840.1, supp... 84 1e-15
ref|NP_192755.1| putative protein; protein id: At4g10170.1 [Arab... 39 0.031
dbj|BAB92457.1| P0698A10.27 [Oryza sativa (japonica cultivar-gro... 39 0.031
>ref|NP_200111.1| putative protein; protein id: At5g52990.1 [Arabidopsis thaliana]
gi|8809588|dbj|BAA97139.1|
gene_id:MNB8.5~pir||T09023~similar to unknown protein
[Arabidopsis thaliana]
Length = 272
Score = 85.5 bits (210), Expect = 4e-16
Identities = 32/48 (66%), Positives = 39/48 (80%)
Frame = -3
Query: 487 GVPGDHHHRHKAKHVWKKHVWVVLLLDLFVCAVLFVIWLWVCSGFKCM 344
G+ DHHHR KAK +WKKHVWVVL+ D +CAVLF IWLW+C GF+C+
Sbjct: 223 GLLSDHHHRQKAKQIWKKHVWVVLMFDFCICAVLFGIWLWICEGFQCI 270
>gb|AAO42845.1| At5g52990 [Arabidopsis thaliana]
Length = 272
Score = 85.5 bits (210), Expect = 4e-16
Identities = 32/48 (66%), Positives = 39/48 (80%)
Frame = -3
Query: 487 GVPGDHHHRHKAKHVWKKHVWVVLLLDLFVCAVLFVIWLWVCSGFKCM 344
G+ DHHHR KAK +WKKHVWVVL+ D +CAVLF IWLW+C GF+C+
Sbjct: 223 GLLSDHHHRQKAKQIWKKHVWVVLMFDFCICAVLFGIWLWICEGFQCI 270
>ref|NP_194513.1| putative protein; protein id: At4g27840.1, supported by cDNA:
gi_17978988 [Arabidopsis thaliana]
gi|7487475|pir||T09023 hypothetical protein T27E11.80 -
Arabidopsis thaliana gi|4972115|emb|CAB43972.1| putative
protein [Arabidopsis thaliana]
gi|7269637|emb|CAB81433.1| putative protein [Arabidopsis
thaliana] gi|17978989|gb|AAL47455.1| AT4g27840/T27E11_80
[Arabidopsis thaliana] gi|22655346|gb|AAM98265.1|
At4g27840/T27E11_80 [Arabidopsis thaliana]
Length = 260
Score = 84.0 bits (206), Expect = 1e-15
Identities = 31/51 (60%), Positives = 40/51 (77%)
Frame = -3
Query: 496 VTKGVPGDHHHRHKAKHVWKKHVWVVLLLDLFVCAVLFVIWLWVCSGFKCM 344
V G+ DHHHR KAK +W+KHVW+VL+ DL +C VLF IWLW+C GF+C+
Sbjct: 208 VRNGLIHDHHHRQKAKQIWRKHVWIVLMFDLCICLVLFGIWLWICQGFQCI 258
>ref|NP_192755.1| putative protein; protein id: At4g10170.1 [Arabidopsis thaliana]
gi|7486316|pir||T04067 hypothetical protein F28M11.90 -
Arabidopsis thaliana gi|4538981|emb|CAB39769.1| putative
protein [Arabidopsis thaliana]
gi|7267713|emb|CAB78140.1| putative protein [Arabidopsis
thaliana] gi|28416649|gb|AAO42855.1| At4g10170
[Arabidopsis thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.031
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = -3
Query: 442 WKKHVWVVLLLDLFVCAVLFVIWLWVCSGFKC 347
W++ V +VL +D +C LF IWL +C G +C
Sbjct: 220 WRRLVQIVLAIDAAICLTLFGIWLAICRGIEC 251
>dbj|BAB92457.1| P0698A10.27 [Oryza sativa (japonica cultivar-group)]
Length = 242
Score = 39.3 bits (90), Expect = 0.031
Identities = 15/40 (37%), Positives = 26/40 (64%)
Frame = -3
Query: 463 RHKAKHVWKKHVWVVLLLDLFVCAVLFVIWLWVCSGFKCM 344
R + + W ++ VV+ ++L + VLFV+W+ VC GF C+
Sbjct: 201 RRRTRRSWWRYSKVVIGVELVLFLVLFVVWMIVCKGFNCV 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,191,143
Number of Sequences: 1393205
Number of extensions: 11516758
Number of successful extensions: 39942
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 37254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39821
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
