Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002104A_C01 KMC002104A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195553.1| putative pollen allergen; protein id: At4g38400... 184 7e-46
gb|AAM63819.1| Expansin-like 1 precursor (At-EXPL1) (Ath-ExpBeta... 181 8e-45
ref|NP_190183.1| putative protein; protein id: At3g45970.1, supp... 181 8e-45
gb|AAK84681.1| expansin-like protein 1 [Oryza sativa] 177 1e-43
gb|AAM52409.1| expansin-like protein [Oryza sativa (japonica cul... 177 1e-43
>ref|NP_195553.1| putative pollen allergen; protein id: At4g38400.1, supported by
cDNA: gi_14190354, supported by cDNA: gi_15215878
[Arabidopsis thaliana] gi|20138427|sp|Q9SVE5|EXL2_ARATH
Expansin-like 2 precursor (At-EXPL2) (Ath-ExpBeta-2.2)
gi|7488018|pir||T05668 pollen allergen homolog
F22I13.170 - Arabidopsis thaliana
gi|4539348|emb|CAB37496.1| putative pollen allergen
[Arabidopsis thaliana] gi|7270824|emb|CAB80505.1|
putative pollen allergen [Arabidopsis thaliana]
gi|14190355|gb|AAK55658.1|AF378855_1
AT4g38400/F22I13_170 [Arabidopsis thaliana]
gi|15215879|gb|AAK91483.1| AT4g38400/F22I13_170
[Arabidopsis thaliana]
Length = 265
Score = 184 bits (467), Expect = 7e-46
Identities = 82/124 (66%), Positives = 102/124 (82%)
Frame = -1
Query: 579 VACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWRFMSRNHGAV 400
V C++ N+ + VRVEESSK P+YLAIK LYQGGQTE+V + +AQVGSS+W +M+R+HGAV
Sbjct: 141 VPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAV 200
Query: 399 WDTSRVPQGPLQFRLVVTAGYDGKWVWAQKVLPLDWKNGVIYDSGVKITEIAQEGCFPCD 220
W T +VP G LQFR VVTAGYDGK VW+Q+VLP +W+ G YD+GV+IT+IAQEGC PCD
Sbjct: 201 WVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGCDPCD 260
Query: 219 DGTW 208
D W
Sbjct: 261 DHIW 264
>gb|AAM63819.1| Expansin-like 1 precursor (At-EXPL1) (Ath-ExpBeta-2.1) [Arabidopsis
thaliana]
Length = 265
Score = 181 bits (458), Expect = 8e-45
Identities = 81/125 (64%), Positives = 102/125 (80%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 VACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSS-NWRFMSRNHGA 403
V C++ N+N+ VRVEE+SKKP+YL IK LYQGGQTE+V +D+AQVGSS NW +M+R+HGA
Sbjct: 140 VPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGA 199
Query: 402 VWDTSRVPQGPLQFRLVVTAGYDGKWVWAQKVLPLDWKNGVIYDSGVKITEIAQEGCFPC 223
VW T +VP G +QFR VVT GYDGK +W+Q VLP +W+ G IYD+GV+IT+IAQEGC PC
Sbjct: 200 VWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCDPC 259
Query: 222 DDGTW 208
D W
Sbjct: 260 DAHIW 264
>ref|NP_190183.1| putative protein; protein id: At3g45970.1, supported by cDNA:
27534., supported by cDNA: gi_14190436, supported by
cDNA: gi_15450562, supported by cDNA: gi_16648731
[Arabidopsis thaliana] gi|20138388|sp|Q9LZT4|EXL1_ARATH
Expansin-like 1 precursor (At-EXPL1) (Ath-ExpBeta-2.1)
gi|11357478|pir||T47537 hypothetical protein F16L2.180 -
Arabidopsis thaliana gi|7339498|emb|CAB82821.1| putative
protein [Arabidopsis thaliana]
gi|14190437|gb|AAK55699.1|AF378896_1 AT3g45970/F16L2_180
[Arabidopsis thaliana] gi|15450563|gb|AAK96459.1|
AT3g45970/F16L2_180 [Arabidopsis thaliana]
gi|16648732|gb|AAL25558.1| AT3g45970/F16L2_180
[Arabidopsis thaliana]
Length = 265
Score = 181 bits (458), Expect = 8e-45
Identities = 81/125 (64%), Positives = 102/125 (80%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 VACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSS-NWRFMSRNHGA 403
V C++ N+N+ VRVEE+SKKP+YL IK LYQGGQTE+V +D+AQVGSS NW +M+R+HGA
Sbjct: 140 VPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGA 199
Query: 402 VWDTSRVPQGPLQFRLVVTAGYDGKWVWAQKVLPLDWKNGVIYDSGVKITEIAQEGCFPC 223
VW T +VP G +QFR VVT GYDGK +W+Q VLP +W+ G IYD+GV+IT+IAQEGC PC
Sbjct: 200 VWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCDPC 259
Query: 222 DDGTW 208
D W
Sbjct: 260 DAHIW 264
>gb|AAK84681.1| expansin-like protein 1 [Oryza sativa]
Length = 279
Score = 177 bits (448), Expect = 1e-43
Identities = 79/125 (63%), Positives = 100/125 (79%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 VACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWRFMSRNHGAV 400
V CE+++++L+VRV+E S+ P+ L I FLYQGGQT+IV VDVAQVGSS+W+FM+R HG
Sbjct: 154 VPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS 213
Query: 399 WDTSRVPQGPLQFRLVVTAGYDGKWVWA-QKVLPLDWKNGVIYDSGVKITEIAQEGCFPC 223
W + P GPLQ RLVVT GYDGKWVWA ++VLP W+ G +YD+GV+IT+IAQEGCFPC
Sbjct: 214 WSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPC 273
Query: 222 DDGTW 208
D W
Sbjct: 274 DTHEW 278
>gb|AAM52409.1| expansin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 177 bits (448), Expect = 1e-43
Identities = 79/125 (63%), Positives = 100/125 (79%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 VACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWRFMSRNHGAV 400
V CE+++++L+VRV+E S+ P+ L I FLYQGGQT+IV VDVAQVGSS+W+FM+R HG
Sbjct: 88 VPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS 147
Query: 399 WDTSRVPQGPLQFRLVVTAGYDGKWVWA-QKVLPLDWKNGVIYDSGVKITEIAQEGCFPC 223
W + P GPLQ RLVVT GYDGKWVWA ++VLP W+ G +YD+GV+IT+IAQEGCFPC
Sbjct: 148 WSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPC 207
Query: 222 DDGTW 208
D W
Sbjct: 208 DTHEW 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,364,169
Number of Sequences: 1393205
Number of extensions: 11192890
Number of successful extensions: 27315
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 26478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27259
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
