Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002102A_C01 KMC002102A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182001.1| unknown protein; protein id: At2g44730.1 [Arabi... 95 5e-19
dbj|BAC42864.1| unknown protein [Arabidopsis thaliana] 87 2e-16
ref|NP_193439.1| hypothetical protein; protein id: At4g17060.1 [... 87 2e-16
gb|AAG60191.1|AC084763_11 hypothetical protein [Oryza sativa] 60 2e-08
ref|NP_176464.1| hypothetical protein; protein id: At1g62763.1 [... 47 2e-04
>ref|NP_182001.1| unknown protein; protein id: At2g44730.1 [Arabidopsis thaliana]
gi|7485544|pir||T01600 hypothetical protein At2g44730
[imported] - Arabidopsis thaliana
gi|3341693|gb|AAC27475.1| unknown protein [Arabidopsis
thaliana]
Length = 372
Score = 95.1 bits (235), Expect = 5e-19
Identities = 66/144 (45%), Positives = 83/144 (56%), Gaps = 27/144 (18%)
Frame = -3
Query: 558 VSVAQPGSKLFG--NQKMNNPSDSG-------SRGFANGGNR---GVKERPFGSGN---- 427
VS+AQPG + G +QK +G RG GG+ V P G G
Sbjct: 226 VSIAQPGPRFPGKIDQKYTASPSAGVSSNPRAGRGIGAGGSSYGARVVRIPEGGGKRGRE 285
Query: 426 ------QRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAKEIEQMRMDMEMKRTEMILESQ 265
+ + DP+ E+ SAIK+L D VR EQ +MEM +EIE MRMD EMKRT+MILESQ
Sbjct: 286 MMMKTEEDDNDPMVEIASAIKLLGDTLVRTEQTRMEMTREIEAMRMDTEMKRTKMILESQ 345
Query: 264 QRIVEAFAQAVS-----EKQKKKK 208
QRIVEAFA+++S E+Q KKK
Sbjct: 346 QRIVEAFAKSLSDYTTTEEQDKKK 369
>dbj|BAC42864.1| unknown protein [Arabidopsis thaliana]
Length = 434
Score = 86.7 bits (213), Expect = 2e-16
Identities = 45/105 (42%), Positives = 71/105 (66%), Gaps = 1/105 (0%)
Frame = -3
Query: 504 PSDSG-SRGFANGGNRGVKERPFGSGNQRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAK 328
P ++G S G+ G + K + + E DP+ E+VS++K+L + FVR+E KMEM +
Sbjct: 332 PRNTGASNGY--GSSSRFKHEQMNAAAEVESDPIDEVVSSVKMLTEMFVRVENSKMEMIR 389
Query: 327 EIEQMRMDMEMKRTEMILESQQRIVEAFAQAVSEKQKKKKGNPVA 193
E+E+ RM+ME+K +M+LESQQ+I+ AFA+A+SEK+ PV+
Sbjct: 390 EMEKSRMEMELKHCQMMLESQQQIIGAFAEALSEKKSTNARRPVS 434
>ref|NP_193439.1| hypothetical protein; protein id: At4g17060.1 [Arabidopsis
thaliana] gi|7485030|pir||A71439 hypothetical protein -
Arabidopsis thaliana gi|2245063|emb|CAB10486.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268457|emb|CAB80977.1| hypothetical protein
[Arabidopsis thaliana]
Length = 310
Score = 86.7 bits (213), Expect = 2e-16
Identities = 45/105 (42%), Positives = 71/105 (66%), Gaps = 1/105 (0%)
Frame = -3
Query: 504 PSDSG-SRGFANGGNRGVKERPFGSGNQRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAK 328
P ++G S G+ G + K + + E DP+ E+VS++K+L + FVR+E KMEM +
Sbjct: 208 PRNTGASNGY--GSSSRFKHEQMNAAAEVESDPIDEVVSSVKMLTEMFVRVENSKMEMMR 265
Query: 327 EIEQMRMDMEMKRTEMILESQQRIVEAFAQAVSEKQKKKKGNPVA 193
E+E+ RM+ME+K +M+LESQQ+I+ AFA+A+SEK+ PV+
Sbjct: 266 EMEKSRMEMELKHCQMMLESQQQIIGAFAEALSEKKSTNARRPVS 310
>gb|AAG60191.1|AC084763_11 hypothetical protein [Oryza sativa]
Length = 336
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/64 (42%), Positives = 46/64 (71%)
Frame = -3
Query: 435 SGNQRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAKEIEQMRMDMEMKRTEMILESQQRI 256
S E + + E+ SA++ + D F+RME+ ++E++ +IE+ RM+ EMKRT+ +L++QQ
Sbjct: 242 SEEDAEAEAMAEVASALRAVGDKFLRMEERRLEISLQIEKERMESEMKRTQTLLDAQQLF 301
Query: 255 VEAF 244
VEAF
Sbjct: 302 VEAF 305
>ref|NP_176464.1| hypothetical protein; protein id: At1g62763.1 [Arabidopsis
thaliana] gi|6630459|gb|AAF19547.1|AC007190_15 F23N19.12
[Arabidopsis thaliana]
Length = 312
Score = 47.0 bits (110), Expect = 2e-04
Identities = 39/104 (37%), Positives = 49/104 (46%), Gaps = 7/104 (6%)
Frame = +3
Query: 171 LAIVQRVMLPGYPFSSSASQKQLGRKPPRSS-AAIPGSSQCASSPYPFAFA-RSPSPSPS 344
+AI+ + S S+S L PP SS ++ P SS SSP P + + SP P P
Sbjct: 14 IAILLFITTSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPP 73
Query: 345 SSAPSSRTHLA---KP*SHSPFPQP--GLSPSGYPTRMASPSHP 461
SS+P S + P S SP P LSPS P SPS P
Sbjct: 74 SSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Score = 32.7 bits (73), Expect = 3.1
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 198 PGYPFSS--SASQKQLGRKPPRSS-AAIPGSSQCASSPYPFAFA-RSPSPSPSSSAPSS 362
P P SS S+ L PP SS ++ P SS SSP P + + SP P P SS+P S
Sbjct: 70 PPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLS 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,024,057
Number of Sequences: 1393205
Number of extensions: 13115888
Number of successful extensions: 79438
Number of sequences better than 10.0: 966
Number of HSP's better than 10.0 without gapping: 59933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74093
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
