Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002099A_C01 KMC002099A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61045.1| unknown [Arabidopsis thaliana] 214 1e-54
ref|NP_564963.1| expressed protein; protein id: At1g69380.1, sup... 213 2e-54
dbj|BAB63588.1| P0403C05.8 [Oryza sativa (japonica cultivar-group)] 196 3e-49
ref|NP_196865.1| putative protein; protein id: At5g13610.1, supp... 179 2e-44
gb|AAM63653.1| unknown [Arabidopsis thaliana] 177 8e-44
>gb|AAM61045.1| unknown [Arabidopsis thaliana]
Length = 373
Score = 214 bits (544), Expect = 1e-54
Identities = 103/130 (79%), Positives = 117/130 (89%)
Frame = -2
Query: 647 VDGLVEEFAGINRGMEKSGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 468
V+ LVEEFA INR M K+GTFTM +KKL QLVGKANSN+ADVILKVGLFERSEIAWR+A+
Sbjct: 239 VNKLVEEFAVINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREAR 298
Query: 467 YAEIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENV 288
YA+IYEYLREEYE++QRFG+LDYKLKF+EHNIHFLQEV+QNR+SD LEWCII LL IEN
Sbjct: 299 YAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENA 358
Query: 287 ISFYEIIHAS 258
IS YEI+ S
Sbjct: 359 ISIYEIVRES 368
>ref|NP_564963.1| expressed protein; protein id: At1g69380.1, supported by cDNA:
108982. [Arabidopsis thaliana]
gi|12325085|gb|AAG52494.1|AC018364_12 hypothetical
protein; 13477-15179 [Arabidopsis thaliana]
gi|12597794|gb|AAG60106.1|AC073178_17 hypothetical
protein [Arabidopsis thaliana]
Length = 373
Score = 213 bits (542), Expect = 2e-54
Identities = 102/130 (78%), Positives = 116/130 (88%)
Frame = -2
Query: 647 VDGLVEEFAGINRGMEKSGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 468
V+ LVEEFA INR M K+GTFTM +KKL QLVGKANSN+ADVILKVGLFERSEIAWR+A+
Sbjct: 239 VNKLVEEFADINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEIAWREAR 298
Query: 467 YAEIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENV 288
YA+IYEYLREEYE++QRFG+LDYKLKF+EHNIHFLQEV+QNR+SD LEWCII LL IEN
Sbjct: 299 YAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSDLLEWCIIFLLAIENA 358
Query: 287 ISFYEIIHAS 258
I YEI+ S
Sbjct: 359 IGIYEIVRES 368
>dbj|BAB63588.1| P0403C05.8 [Oryza sativa (japonica cultivar-group)]
Length = 405
Score = 196 bits (497), Expect = 3e-49
Identities = 97/134 (72%), Positives = 115/134 (85%)
Frame = -2
Query: 647 VDGLVEEFAGINRGMEKSGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 468
VD +VEEF INR MEK+G FTM +KKL QLVGKANSNLADVI+++GLF+RSEIAW+++
Sbjct: 272 VDDMVEEFTEINRVMEKTGNFTMQRKKLFQLVGKANSNLADVIIRLGLFDRSEIAWKNSN 331
Query: 467 YAEIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENV 288
YA+I EYLREEYE+ QRFG+LD+KLKFVEHNIHFLQEVLQNR+SD LEW +I LL IE V
Sbjct: 332 YAQILEYLREEYELNQRFGSLDFKLKFVEHNIHFLQEVLQNRRSDLLEWGVIILLIIEIV 391
Query: 287 ISFYEIIHASNTVS 246
IS YEII S+ +S
Sbjct: 392 ISLYEIIKDSSMMS 405
>ref|NP_196865.1| putative protein; protein id: At5g13610.1, supported by cDNA:
26016. [Arabidopsis thaliana] gi|9758026|dbj|BAB08687.1|
gb|AAF67764.1~gene_id:MSH12.7~similar to unknown protein
[Arabidopsis thaliana] gi|22022566|gb|AAM83240.1|
AT5g13610/MSH12_7 [Arabidopsis thaliana]
gi|23308429|gb|AAN18184.1| At5g13610/MSH12_7
[Arabidopsis thaliana]
Length = 402
Score = 179 bits (455), Expect = 2e-44
Identities = 88/130 (67%), Positives = 107/130 (81%)
Frame = -2
Query: 647 VDGLVEEFAGINRGMEKSGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 468
VDG+V EF INR +E +GTFTM +KKL QLVGKAN LADVILK+GLFERS+IAW+DAK
Sbjct: 272 VDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAK 331
Query: 467 YAEIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENV 288
Y +I+E+LR+E+E+ Q F NLDYKLKFVEHN+ FLQE+LQNRKS LEW II L+++E
Sbjct: 332 YGQIWEFLRDEFELTQSFANLDYKLKFVEHNVRFLQEILQNRKSATLEWLIIILISMEIA 391
Query: 287 ISFYEIIHAS 258
ISFY + AS
Sbjct: 392 ISFYNMSRAS 401
>gb|AAM63653.1| unknown [Arabidopsis thaliana]
Length = 402
Score = 177 bits (450), Expect = 8e-44
Identities = 87/130 (66%), Positives = 106/130 (80%)
Frame = -2
Query: 647 VDGLVEEFAGINRGMEKSGTFTMDKKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAK 468
VDG+V EF INR +E +GTFTM +KKL QLVGKAN LADVILK+GLFERS+IAW+DAK
Sbjct: 272 VDGMVAEFTEINRQLEITGTFTMKRKKLFQLVGKANVILADVILKLGLFERSDIAWKDAK 331
Query: 467 YAEIYEYLREEYEVAQRFGNLDYKLKFVEHNIHFLQEVLQNRKSDFLEWCIIGLLTIENV 288
Y +I+E+LR+E+E+ Q F NLDYKLKF EHN+ FLQE+LQNRKS LEW II L+++E
Sbjct: 332 YGQIWEFLRDEFELTQSFANLDYKLKFXEHNVRFLQEILQNRKSATLEWLIIILISMEIA 391
Query: 287 ISFYEIIHAS 258
ISFY + AS
Sbjct: 392 ISFYNMSRAS 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,762,512
Number of Sequences: 1393205
Number of extensions: 10128233
Number of successful extensions: 24100
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 23396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24097
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
