Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002094A_C01 KMC002094A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia ... 237 7e-62
dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton su... 236 1e-61
gb|AAM21638.1|AF492022_1 geranylgeranyl pyrophosphate synthase [... 234 4e-61
dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasi... 233 9e-61
sp|Q42698|GGPP_CATRO Geranylgeranyl pyrophosphate synthetase, ch... 233 9e-61
>dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia dulcis]
Length = 351
Score = 237 bits (605), Expect = 7e-62
Identities = 119/139 (85%), Positives = 131/139 (93%)
Frame = -3
Query: 561 VVDIYSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLL 382
VVDI SEG+S++GLE LE+IHLHKTAALLEG+VVLGAILGGG+D EVERLRKFA CIGLL
Sbjct: 213 VVDICSEGVSEIGLEHLEYIHLHKTAALLEGSVVLGAILGGGNDEEVERLRKFARCIGLL 272
Query: 381 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFD 202
FQVVDDILDVTK+S ELGKTAGKDLVADK TYPKL+GIEKS+EFAEKLNR+AQEQL+GFD
Sbjct: 273 FQVVDDILDVTKTSVELGKTAGKDLVADKTTYPKLIGIEKSREFAEKLNREAQEQLVGFD 332
Query: 201 PHKAAPLIALANYIAYRQN 145
KAAPLIALANYIAYR+N
Sbjct: 333 SDKAAPLIALANYIAYREN 351
>dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton sublyratus]
Length = 368
Score = 236 bits (602), Expect = 1e-61
Identities = 120/139 (86%), Positives = 131/139 (93%)
Frame = -3
Query: 561 VVDIYSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLL 382
VVDI SEGLS+V LE+LEFIH+HKTA LLEGAVVLGAI+GGG+D EVE+LRK+A IGLL
Sbjct: 230 VVDICSEGLSEVDLEKLEFIHIHKTAKLLEGAVVLGAIMGGGTDEEVEKLRKYARDIGLL 289
Query: 381 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFD 202
FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL+GIEKS+EFAEKLN++AQEQL GFD
Sbjct: 290 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLMGIEKSREFAEKLNKEAQEQLAGFD 349
Query: 201 PHKAAPLIALANYIAYRQN 145
P KAAPLIALANYIAYRQN
Sbjct: 350 PEKAAPLIALANYIAYRQN 368
>gb|AAM21638.1|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp.
creticus]
Length = 364
Score = 234 bits (598), Expect = 4e-61
Identities = 121/139 (87%), Positives = 128/139 (92%)
Frame = -3
Query: 561 VVDIYSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLL 382
VVDI SEGL+DVGLE LEFIH+HKTAALLEG+VVLGAILGGGSD EVE+LRKFA CIGLL
Sbjct: 226 VVDICSEGLTDVGLEHLEFIHVHKTAALLEGSVVLGAILGGGSDEEVEKLRKFARCIGLL 285
Query: 381 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFD 202
FQVVDDILDVTKSS ELGKTAGKDLVADKVTYPKL+GIEKS+EFAE+L DA EQL GFD
Sbjct: 286 FQVVDDILDVTKSSTELGKTAGKDLVADKVTYPKLMGIEKSREFAEELKNDAVEQLRGFD 345
Query: 201 PHKAAPLIALANYIAYRQN 145
KAAPLIALANYIAYRQN
Sbjct: 346 QEKAAPLIALANYIAYRQN 364
>dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasiliensis]
Length = 370
Score = 233 bits (595), Expect = 9e-61
Identities = 120/139 (86%), Positives = 130/139 (93%)
Frame = -3
Query: 561 VVDIYSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLL 382
VVDI SEG S+V LE+LEFIH+HKTA LLEGAVVLGAILGGG+D EVE+LRK+A IGLL
Sbjct: 232 VVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291
Query: 381 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFD 202
FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKS+EFAEKLN++AQEQL GFD
Sbjct: 292 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFD 351
Query: 201 PHKAAPLIALANYIAYRQN 145
P KAAPLIALANYIA+RQN
Sbjct: 352 PEKAAPLIALANYIAHRQN 370
>sp|Q42698|GGPP_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplast precursor
(GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase ; Geranyltranstransferase ;
Farnesyltranstransferase ] gi|7447357|pir||T09966
farnesyltranstransferase (EC 2.5.1.29) - Madagascar
periwinkle gi|1063276|emb|CAA63486.1| geranylgeranyl
pyrophosphate synthase [Catharanthus roseus]
Length = 357
Score = 233 bits (595), Expect = 9e-61
Identities = 116/139 (83%), Positives = 129/139 (92%)
Frame = -3
Query: 561 VVDIYSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLL 382
VVD+ SEG++DVGLE LEFIH+HKTAALLEG+VVLGAI+GG +D ++ +LRKFA CIGLL
Sbjct: 219 VVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLL 278
Query: 381 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFD 202
FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGI+KS+EFAEKLNR+AQEQL FD
Sbjct: 279 FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFD 338
Query: 201 PHKAAPLIALANYIAYRQN 145
P KAAPLIALANYIAYR N
Sbjct: 339 PEKAAPLIALANYIAYRDN 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,323,960
Number of Sequences: 1393205
Number of extensions: 10497862
Number of successful extensions: 31965
Number of sequences better than 10.0: 476
Number of HSP's better than 10.0 without gapping: 30196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31834
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
