Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002084A_C01 KMC002084A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB13506.1| homeoprotein LjEMX [Lethenteron japonicum] 33 0.79
gb|AAF27066.1|AC008262_15 F4N2.17 [Arabidopsis thaliana] 33 1.0
ref|NP_564955.1| putative serine threonine kinase; protein id: A... 33 1.0
gb|AAL60020.1| putative serine threonine kinase [Arabidopsis tha... 33 1.0
ref|NP_571177.1| POU domain gene 1 [Danio rerio] gi|400833|sp|P3... 32 1.4
>dbj|BAB13506.1| homeoprotein LjEMX [Lethenteron japonicum]
Length = 276
Score = 33.1 bits (74), Expect = 0.79
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +1
Query: 367 HHPNPLV*ASVLEVPNGQYHHHHHFQH 447
HH PL+ + P+G +HHHHH H
Sbjct: 99 HHLQPLLAVPAMH-PSGHHHHHHHLSH 124
>gb|AAF27066.1|AC008262_15 F4N2.17 [Arabidopsis thaliana]
Length = 1120
Score = 32.7 bits (73), Expect = 1.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 448 GVGSDDDDGIAHWVPPILKPKPRDLGGGGS 359
G G +DDD + +PP+LK P+D GGG S
Sbjct: 65 GEGEEDDDDDS-MLPPLLKRLPKDFGGGAS 93
>ref|NP_564955.1| putative serine threonine kinase; protein id: At1g69220.1,
supported by cDNA: gi_2352083 [Arabidopsis thaliana]
gi|25404800|pir||B96716 probable serine/threonine kinase
F23O10.20 [imported] - Arabidopsis thaliana
gi|2352084|gb|AAB68776.1| serine/threonine kinase
[Arabidopsis thaliana]
gi|12325090|gb|AAG52499.1|AC018364_17 putative
serine/threonine kinase; 70789-76610 [Arabidopsis
thaliana]
Length = 836
Score = 32.7 bits (73), Expect = 1.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 448 GVGSDDDDGIAHWVPPILKPKPRDLGGGGS 359
G G +DDD + +PP+LK P+D GGG S
Sbjct: 65 GEGEEDDDDDS-MLPPLLKRLPKDFGGGAS 93
>gb|AAL60020.1| putative serine threonine kinase [Arabidopsis thaliana]
gi|22136894|gb|AAM91791.1| putative serine threonine
kinase [Arabidopsis thaliana]
Length = 809
Score = 32.7 bits (73), Expect = 1.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 448 GVGSDDDDGIAHWVPPILKPKPRDLGGGGS 359
G G +DDD + +PP+LK P+D GGG S
Sbjct: 65 GEGEEDDDDDS-MLPPLLKRLPKDFGGGAS 93
>ref|NP_571177.1| POU domain gene 1 [Danio rerio] gi|400833|sp|P31366|POU1_BRARE POU
domain protein 1 (ZFPOU1) gi|103818|pir||JH0710
transcription factor Brn-1 - zebra fish
gi|222976|dbj|BAA02377.1| POU domain protein [Danio
rerio]
Length = 425
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 355 NQTLHHPNPLV*ASVLEVPNGQYHHHHHFQH 447
+Q+L HP LV E+ + +HHHHH QH
Sbjct: 190 SQSLVHPG-LVRGDTPELDHSSHHHHHHHQH 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,327,930
Number of Sequences: 1393205
Number of extensions: 8939296
Number of successful extensions: 28267
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 21364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25591
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
