Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002083A_C01 KMC002083A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172473.1| unknown protein; protein id: At1g10020.1 [Arabi... 59 2e-08
gb|AAM62635.1| unknown [Arabidopsis thaliana] 58 7e-08
gb|AAL60032.1| unknown protein [Arabidopsis thaliana] 58 7e-08
ref|NP_188602.1| unknown protein; protein id: At3g19680.1, suppo... 58 7e-08
dbj|BAB55506.1| P0638D12.14 [Oryza sativa (japonica cultivar-gro... 55 3e-07
>ref|NP_172473.1| unknown protein; protein id: At1g10020.1 [Arabidopsis thaliana]
gi|7487490|pir||T00621 hypothetical protein T27I1.4 -
Arabidopsis thaliana gi|3540181|gb|AAC34331.1| Unknown
protein [Arabidopsis thaliana]
Length = 461
Score = 59.3 bits (142), Expect = 2e-08
Identities = 26/34 (76%), Positives = 33/34 (96%)
Frame = -3
Query: 492 EDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQ 391
EDAAA+VAL+AA+DLS+DACRLF+QR+RKELC +
Sbjct: 425 EDAAAYVALSAAIDLSMDACRLFNQRMRKELCHE 458
>gb|AAM62635.1| unknown [Arabidopsis thaliana]
Length = 210
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -3
Query: 492 EDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQMDL 382
EDAAA VALAAAVDLS+DACRLFS +LRKEL QQ L
Sbjct: 171 EDAAAHVALAAAVDLSLDACRLFSHKLRKELRQQSQL 207
>gb|AAL60032.1| unknown protein [Arabidopsis thaliana]
Length = 491
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -3
Query: 492 EDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQMDL 382
EDAAA VALAAAVDLS+DACRLFS +LRKEL QQ L
Sbjct: 452 EDAAAHVALAAAVDLSLDACRLFSHKLRKELRQQSQL 488
>ref|NP_188602.1| unknown protein; protein id: At3g19680.1, supported by cDNA:
gi_18176371 [Arabidopsis thaliana]
gi|25354743|pir||T52398 hypothetical protein MMB12.17
[imported] - Arabidopsis thaliana
gi|9294435|dbj|BAB02555.1|
gb|AAC34331.1~gene_id:MMB12.17~similar to unknown
protein [Arabidopsis thaliana]
gi|23297407|gb|AAN12962.1| unknown protein [Arabidopsis
thaliana]
Length = 491
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -3
Query: 492 EDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQMDL 382
EDAAA VALAAAVDLS+DACRLFS +LRKEL QQ L
Sbjct: 452 EDAAAHVALAAAVDLSLDACRLFSHKLRKELRQQSQL 488
>dbj|BAB55506.1| P0638D12.14 [Oryza sativa (japonica cultivar-group)]
Length = 525
Score = 55.5 bits (132), Expect = 3e-07
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -3
Query: 489 DAAAFVALAAAVDLSVDACRLFSQRLRKELCQQMD 385
D A FVALAAAVDL +DAC+LFSQRLRKELC +
Sbjct: 490 DVALFVALAAAVDLCMDACKLFSQRLRKELCHDQE 524
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,397,703
Number of Sequences: 1393205
Number of extensions: 8808259
Number of successful extensions: 36370
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 33043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36037
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
