Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002068A_C01 KMC002068A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94964.1| epsilon1-COP [Glycine max] 182 3e-45
dbj|BAA94965.1| epsilon2-COP [Glycine max] 181 4e-45
gb|AAM65018.1| coatomer-like protein, epsilon subunit [Arabidops... 150 8e-36
ref|NP_174351.1| coatomer-like protein, epsilon subunit; protein... 150 8e-36
dbj|BAA94966.1| epsilon1-COP [Oryza sativa (japonica cultivar-gr... 148 4e-35
>dbj|BAA94964.1| epsilon1-COP [Glycine max]
Length = 290
Score = 182 bits (462), Expect = 3e-45
Identities = 89/92 (96%), Positives = 92/92 (99%)
Frame = -2
Query: 578 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKS 399
RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPS+KS
Sbjct: 198 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKS 257
Query: 398 FSQLKLSHPDHVLVKRVSTAEESFDRALQSFS 303
FSQLKLSHP+HVLVKRVS+AEESFDRALQSFS
Sbjct: 258 FSQLKLSHPEHVLVKRVSSAEESFDRALQSFS 289
>dbj|BAA94965.1| epsilon2-COP [Glycine max]
Length = 288
Score = 181 bits (460), Expect = 4e-45
Identities = 88/92 (95%), Positives = 92/92 (99%)
Frame = -2
Query: 578 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKS 399
RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPS+KS
Sbjct: 196 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKS 255
Query: 398 FSQLKLSHPDHVLVKRVSTAEESFDRALQSFS 303
FSQLK+SHP+HVLVKRVS+AEESFDRALQSFS
Sbjct: 256 FSQLKISHPEHVLVKRVSSAEESFDRALQSFS 287
>gb|AAM65018.1| coatomer-like protein, epsilon subunit [Arabidopsis thaliana]
Length = 289
Score = 150 bits (380), Expect = 8e-36
Identities = 70/92 (76%), Positives = 85/92 (92%)
Frame = -2
Query: 578 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKS 399
+Y TSL+LNGKAVCCMHMGNF+EAETLL+EALNKDA+DPETLANLVVC LH+GK SS+
Sbjct: 198 KYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRY 257
Query: 398 FSQLKLSHPDHVLVKRVSTAEESFDRALQSFS 303
+QLKLSHP+HVLVKR ++AE++F+RALQSF+
Sbjct: 258 LNQLKLSHPEHVLVKRAASAEDNFERALQSFA 289
>ref|NP_174351.1| coatomer-like protein, epsilon subunit; protein id: At1g30630.1,
supported by cDNA: 35814., supported by cDNA:
gi_13194793, supported by cDNA: gi_13878124, supported
by cDNA: gi_17104796 [Arabidopsis thaliana]
gi|25350283|pir||F86431 hypothetical protein T5I8.8
[imported] - Arabidopsis thaliana
gi|4587519|gb|AAD25750.1|AC007060_8 Strong similarity to
F19I3.7 gi|3033380 putative coatomer epsilon subunit
from Arabidopsis thaliana BAC gb|AC004238. ESTs
gb|Z17908, gb|AA728673, gb|N96555, gb|H76335,
gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119
and AI100483 come from this gene
gi|13194794|gb|AAK15559.1|AF348588_1 putative coatomer
protein, epsilon subunit [Arabidopsis thaliana]
gi|13878125|gb|AAK44140.1|AF370325_1 putative coatomer
protein, epsilon subunit [Arabidopsis thaliana]
gi|17104797|gb|AAL34287.1| putative coatomer protein,
epsilon subunit [Arabidopsis thaliana]
Length = 292
Score = 150 bits (380), Expect = 8e-36
Identities = 70/92 (76%), Positives = 85/92 (92%)
Frame = -2
Query: 578 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKS 399
+Y TSL+LNGKAVCCMHMGNF+EAETLL+EALNKDA+DPETLANLVVC LH+GK SS+
Sbjct: 201 KYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRY 260
Query: 398 FSQLKLSHPDHVLVKRVSTAEESFDRALQSFS 303
+QLKLSHP+HVLVKR ++AE++F+RALQSF+
Sbjct: 261 LNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292
>dbj|BAA94966.1| epsilon1-COP [Oryza sativa (japonica cultivar-group)]
Length = 287
Score = 148 bits (374), Expect = 4e-35
Identities = 69/90 (76%), Positives = 82/90 (90%)
Frame = -2
Query: 578 RYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKS 399
+Y T ++LNGKAVCCMHMG+FDEAETLL+EALNKDA+DPETLANL+VC LHLGKPSS+
Sbjct: 196 KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRY 255
Query: 398 FSQLKLSHPDHVLVKRVSTAEESFDRALQS 309
SQLKLSHPDHVLVKR +AE++F+RALQ+
Sbjct: 256 LSQLKLSHPDHVLVKRAVSAEDNFERALQA 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,495,092
Number of Sequences: 1393205
Number of extensions: 9147762
Number of successful extensions: 22487
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 21809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22459
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
