Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002061A_C02 KMC002061A_c02
(823 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzym... 301 8e-81
sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proenzyme ... 298 5e-80
gb|AAL89723.1|AF488307_1 S-adenosylmethionine decarboxylase [Gly... 292 4e-78
dbj|BAB83763.1| S-adenosylmethionine decarboxylase [Phaseolus lu... 260 2e-68
sp|Q96555|DCAM_DATST S-adenosylmethionine decarboxylase proenzym... 249 3e-65
>sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|7209279|emb|CAB76966.1| S-adenosylmethionine
decarboxylase [Vicia faba]
Length = 353
Score = 301 bits (771), Expect = 8e-81
Identities = 142/174 (81%), Positives = 161/174 (91%)
Frame = -3
Query: 821 VYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSV 642
VYTLEMCMTGLDREKA VF+K Q+GSAA MTVNSGIR ILPNS+ICDFDFEPCGYSMNSV
Sbjct: 177 VYTLEMCMTGLDREKASVFFKQQTGSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSV 236
Query: 641 EGDAVSTIHVTPEDGFSYASFETVGYHLKAVDLKELVVRVLACFEPSEFSIAVHADNASR 462
EG AVSTIH+TPEDGFSYASFET GY LKA++L E+V+RVLACF+P+EFS+AVH DNAS+
Sbjct: 237 EGPAVSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASK 296
Query: 461 SFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLKCWKDD 300
SFEQGC+LD+KGY C+E+S +GLGM GSVVYQKFVK AS+CGSPRSTLKCWKD+
Sbjct: 297 SFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK-ASDCGSPRSTLKCWKDE 349
>sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|7436596|pir||T06515 probable adenosylmethionine
decarboxylase (EC 4.1.1.50) - garden pea
gi|1421752|gb|AAB03865.1| S-adenosylmethionine
decarboxylase [Pisum sativum]
Length = 353
Score = 298 bits (764), Expect = 5e-80
Identities = 141/174 (81%), Positives = 160/174 (91%)
Frame = -3
Query: 821 VYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSV 642
VYTLEMCMTGLDREKA VF+K+Q+GSAA MTVNSGIR IL NS+ICDFDFEPCGYSMNSV
Sbjct: 177 VYTLEMCMTGLDREKASVFFKEQTGSAAEMTVNSGIRKILRNSEICDFDFEPCGYSMNSV 236
Query: 641 EGDAVSTIHVTPEDGFSYASFETVGYHLKAVDLKELVVRVLACFEPSEFSIAVHADNASR 462
EG AVSTIH+TPEDGFSYASFET GY LKA++L E+V+RVLACF+P+EFS+AVH DNAS+
Sbjct: 237 EGSAVSTIHITPEDGFSYASFETAGYDLKAINLNEMVMRVLACFQPTEFSVAVHVDNASK 296
Query: 461 SFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLKCWKDD 300
SFEQGC+LD+KGY CEE+S +GLGM GSVVYQKF+KT S CGSPRSTLKCWKD+
Sbjct: 297 SFEQGCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKT-SYCGSPRSTLKCWKDE 349
>gb|AAL89723.1|AF488307_1 S-adenosylmethionine decarboxylase [Glycine max]
Length = 355
Score = 292 bits (748), Expect = 4e-78
Identities = 144/174 (82%), Positives = 156/174 (88%)
Frame = -3
Query: 821 VYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSV 642
VYTLEMCMTGLDREKAQVFYK+QS SAAMMTVNSGIR ILP+S+ICDFDFEPCGYSMNSV
Sbjct: 179 VYTLEMCMTGLDREKAQVFYKEQSASAAMMTVNSGIRKILPDSEICDFDFEPCGYSMNSV 238
Query: 641 EGDAVSTIHVTPEDGFSYASFETVGYHLKAVDLKELVVRVLACFEPSEFSIAVHADNASR 462
EG AVSTIHVTPEDGFSYASFETVGY KAV+L E+V RVLACF P+EFS+AVH D AS+
Sbjct: 239 EGAAVSTIHVTPEDGFSYASFETVGYDFKAVNLNEMVQRVLACFLPTEFSVAVHVDGASK 298
Query: 461 SFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLKCWKDD 300
SFEQ C LD+KGY EERS EGLGMGGSVVYQKF KT S+CGSPRSTLKCW ++
Sbjct: 299 SFEQTCFLDVKGYCREERSHEGLGMGGSVVYQKFGKT-SDCGSPRSTLKCWNEE 351
>dbj|BAB83763.1| S-adenosylmethionine decarboxylase [Phaseolus lunatus]
Length = 354
Score = 260 bits (665), Expect = 2e-68
Identities = 129/174 (74%), Positives = 144/174 (82%)
Frame = -3
Query: 821 VYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSV 642
V TLEMCMTGLDREKAQ+FYK+QS SAA+MTVNSGIR ILP S ICDFDFEPCGYSMNSV
Sbjct: 178 VCTLEMCMTGLDREKAQIFYKEQSASAAIMTVNSGIRKILPKSDICDFDFEPCGYSMNSV 237
Query: 641 EGDAVSTIHVTPEDGFSYASFETVGYHLKAVDLKELVVRVLACFEPSEFSIAVHADNASR 462
EGDAVSTIH+TPEDGFSYASFETVGY K ++L +V RVL+CF P+EFS+AV D AS+
Sbjct: 238 EGDAVSTIHITPEDGFSYASFETVGYDFKVLNLNAMVDRVLSCFLPNEFSVAVRVDGASK 297
Query: 461 SFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLKCWKDD 300
E C +D+KGY EE E LGMGG VVYQKFVK S+C SPRSTLKCWKD+
Sbjct: 298 PSEHMCFVDVKGYCREEWCHEELGMGGFVVYQKFVK-ISDCVSPRSTLKCWKDE 350
>sp|Q96555|DCAM_DATST S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|1531765|emb|CAA69076.1| S-adenosylmethionine
decarboxylase [Datura stramonium]
Length = 362
Score = 249 bits (636), Expect = 3e-65
Identities = 123/175 (70%), Positives = 142/175 (80%), Gaps = 1/175 (0%)
Frame = -3
Query: 821 VYTLEMCMTGLDREKAQVFYKDQSGSAAMMTVNSGIRNILPNSQICDFDFEPCGYSMNSV 642
VYTLEMCMTGLDREKA VFYK + SAA MTV SGIR ILPNS+ICDF+FEPCGYSMNS+
Sbjct: 181 VYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSI 240
Query: 641 EGDAVSTIHVTPEDGFSYASFETVGYHLKAVDLKELVVRVLACFEPSEFSIAVHADNASR 462
EG AVSTIH+TPEDGFSYASFE+VGY LK ++L LV RVLACFEP+EFSIA+HAD A++
Sbjct: 241 EGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATK 300
Query: 461 SFEQGCVLDLKGYGCEERSLEGLGMGGSVVYQKFVKTASECGSPRSTLK-CWKDD 300
E+ C +D+KGY E S E G GGS+VYQKF KT C SP+S LK CWK++
Sbjct: 301 LLERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKT-PYCASPKSVLKGCWKEE 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 699,652,081
Number of Sequences: 1393205
Number of extensions: 15574735
Number of successful extensions: 42280
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 40111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42141
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42576939184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
