Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002054A_C01 KMC002054A_c01
(938 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567055.1| polygalacturonase, putative; protein id: At3g57... 223 3e-57
pir||T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana... 223 3e-57
ref|XP_128689.2| similar to ectonucleotide pyrophosphatase/phosp... 35 1.6
dbj|BAC41090.1| unnamed protein product [Mus musculus] 35 1.6
gb|AAH27749.1| Similar to ectonucleotide pyrophosphatase/phospho... 35 1.6
>ref|NP_567055.1| polygalacturonase, putative; protein id: At3g57790.1 [Arabidopsis
thaliana]
Length = 490
Score = 223 bits (569), Expect = 3e-57
Identities = 100/163 (61%), Positives = 134/163 (81%), Gaps = 1/163 (0%)
Frame = -1
Query: 938 VSGIVFSNINISTRYYDPLWWGRAEPIYVTTCPRHSTSKEASISDVLFINITANSENGIF 759
VS + FSNINISTRYYDP WWGRAEPIY+TTCPR S++KE SIS++LF+NIT +SENG+F
Sbjct: 311 VSDVTFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITIDSENGVF 370
Query: 758 LAGSKRGLLRNLRFVNMNITYRRFTSYAGGLLDYRPGCQELVKHR-TAGMMMEHIQGLEV 582
L+GS GLL +++F NMN+T+RR+++Y+ GL+DYRPGCQ LV HR T+G++MEH+ G V
Sbjct: 371 LSGSPNGLLSDIKFKNMNLTFRRWSNYSAGLVDYRPGCQGLVNHRATSGIIMEHVNGFRV 430
Query: 581 KNVEMRWSNSNNQLDQWNNPLEFKPSTVNDISFFNFNSVSSTK 453
+NV+++WS+ ++ WN PLEF+PSTVN++SF F S TK
Sbjct: 431 ENVDLKWSDDDDVNAAWNVPLEFRPSTVNNVSFVGFTSGLYTK 473
>pir||T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana
gi|4678268|emb|CAB41176.1| putative protein [Arabidopsis
thaliana]
Length = 614
Score = 223 bits (569), Expect = 3e-57
Identities = 100/163 (61%), Positives = 134/163 (81%), Gaps = 1/163 (0%)
Frame = -1
Query: 938 VSGIVFSNINISTRYYDPLWWGRAEPIYVTTCPRHSTSKEASISDVLFINITANSENGIF 759
VS + FSNINISTRYYDP WWGRAEPIY+TTCPR S++KE SIS++LF+NIT +SENG+F
Sbjct: 311 VSDVTFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITIDSENGVF 370
Query: 758 LAGSKRGLLRNLRFVNMNITYRRFTSYAGGLLDYRPGCQELVKHR-TAGMMMEHIQGLEV 582
L+GS GLL +++F NMN+T+RR+++Y+ GL+DYRPGCQ LV HR T+G++MEH+ G V
Sbjct: 371 LSGSPNGLLSDIKFKNMNLTFRRWSNYSAGLVDYRPGCQGLVNHRATSGIIMEHVNGFRV 430
Query: 581 KNVEMRWSNSNNQLDQWNNPLEFKPSTVNDISFFNFNSVSSTK 453
+NV+++WS+ ++ WN PLEF+PSTVN++SF F S TK
Sbjct: 431 ENVDLKWSDDDDVNAAWNVPLEFRPSTVNNVSFVGFTSGLYTK 473
>ref|XP_128689.2| similar to ectonucleotide pyrophosphatase/phosphodiesterase 4
(putative function) [Homo sapiens] [Mus musculus]
Length = 458
Score = 35.0 bits (79), Expect = 1.6
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 890 DPLWWGRAEPIYVTTCPRHSTSKEASI---SDVLFINITAN 777
DP WW AEPI+VT + + S A++ +DV NITA+
Sbjct: 112 DPFWWNGAEPIWVTNQLQENRSSAAAMWPGTDVPIHNITAS 152
>dbj|BAC41090.1| unnamed protein product [Mus musculus]
Length = 456
Score = 35.0 bits (79), Expect = 1.6
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 890 DPLWWGRAEPIYVTTCPRHSTSKEASI---SDVLFINITAN 777
DP WW AEPI+VT + + S A++ +DV NITA+
Sbjct: 112 DPFWWNGAEPIWVTNQLQENRSSAAAMWPGTDVPIHNITAS 152
>gb|AAH27749.1| Similar to ectonucleotide pyrophosphatase/phosphodiesterase 4
(putative function) [Mus musculus]
Length = 453
Score = 35.0 bits (79), Expect = 1.6
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 890 DPLWWGRAEPIYVTTCPRHSTSKEASI---SDVLFINITAN 777
DP WW AEPI+VT + + S A++ +DV NITA+
Sbjct: 109 DPFWWNGAEPIWVTNQLQENRSSAAAMWPGTDVPIHNITAS 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 770,944,520
Number of Sequences: 1393205
Number of extensions: 16459400
Number of successful extensions: 37292
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 35852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37282
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52414431048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
