Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002053A_C02 KMC002053A_c02
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187573.1| DEAD/DEAH box RNA helicase, putative; protein i... 55 8e-07
dbj|BAC55684.1| putative ATP-dependent RNA helicase [Oryza sativ... 54 2e-06
gb|AAN72041.1| putative RNA helicase [Arabidopsis thaliana] 47 2e-04
ref|NP_173516.1| DEAD/DEAH box RNA helicase, putative; protein i... 47 2e-04
gb|AAB41496.1| endothelial PAS domain protein 1 [Mus musculus] 32 9.1
>ref|NP_187573.1| DEAD/DEAH box RNA helicase, putative; protein id: At3g09620.1
[Arabidopsis thaliana]
gi|6682258|gb|AAF23310.1|AC016661_35 putative RNA
helicase [Arabidopsis thaliana]
Length = 989
Score = 55.1 bits (131), Expect = 8e-07
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -1
Query: 634 SVKRAKTELKRVLEDITNQALQLPGGSQPGKYSVV 530
SVK AK ELKRVLEDITNQ LPGG+Q G+YSV+
Sbjct: 955 SVKTAKAELKRVLEDITNQTFSLPGGAQSGRYSVL 989
>dbj|BAC55684.1| putative ATP-dependent RNA helicase [Oryza sativa (japonica
cultivar-group)]
Length = 891
Score = 53.5 bits (127), Expect = 2e-06
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 634 SVKRAKTELKRVLEDITNQALQLPGGSQPGKYSVV 530
SVK+AK+ELKRVLED N AL LPG +Q GKYSV+
Sbjct: 857 SVKKAKSELKRVLEDCANHALNLPGSAQTGKYSVI 891
>gb|AAN72041.1| putative RNA helicase [Arabidopsis thaliana]
Length = 559
Score = 47.0 bits (110), Expect = 2e-04
Identities = 26/36 (72%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = -1
Query: 634 SVKRAKTELKRVLEDITNQAL-QLPGGSQPGKYSVV 530
SVK AK ELKRVLEDITNQA+ LPGG+ G+YSV+
Sbjct: 525 SVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 559
>ref|NP_173516.1| DEAD/DEAH box RNA helicase, putative; protein id: At1g20920.1
[Arabidopsis thaliana] gi|25518759|pir||H86341
hypothetical protein F9H16.10 - Arabidopsis thaliana
gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA
helicases [Arabidopsis thaliana]
Length = 1166
Score = 47.0 bits (110), Expect = 2e-04
Identities = 26/36 (72%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = -1
Query: 634 SVKRAKTELKRVLEDITNQAL-QLPGGSQPGKYSVV 530
SVK AK ELKRVLEDITNQA+ LPGG+ G+YSV+
Sbjct: 1132 SVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
>gb|AAB41496.1| endothelial PAS domain protein 1 [Mus musculus]
Length = 875
Score = 31.6 bits (70), Expect = 9.1
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 524 VNVK-AKWESVKHSCLAPRSGTNCSYSLPLPIHGHTGGSNEPTLACSILL 378
VN+K A W+SV H R NC P H GS EP L+C I++
Sbjct: 183 VNLKSATWKSVLHCTGQVRVYNNC------PPHSSLCGSKEPLLSCLIIM 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,530,896
Number of Sequences: 1393205
Number of extensions: 11141714
Number of successful extensions: 20734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20733
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
