Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002047A_C01 KMC002047A_c01
(1071 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70910.1|AC087551_9 hypothetical protein [Oryza sativa] 323 3e-87
ref|NP_566673.1| expressed protein; protein id: At3g20970.1, sup... 315 6e-85
pir||A96552 unknown protein, 90320-88994 [imported] - Arabidopsi... 303 3e-81
ref|NP_175550.1| unknown protein; protein id: At1g51390.1 [Arabi... 288 1e-76
dbj|BAC24985.1| unnamed protein product [Mus musculus] 209 6e-53
>gb|AAK70910.1|AC087551_9 hypothetical protein [Oryza sativa]
Length = 272
Score = 323 bits (828), Expect = 3e-87
Identities = 159/189 (84%), Positives = 177/189 (93%)
Frame = -3
Query: 1069 LMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRIFFGSDFVTVTKSEDASWEF 890
LMF+PGKPVMEVGS+DFPN R+AM SPLAK+LFAIDG+TR+FFGSDFVTVTKSE+ SW++
Sbjct: 85 LMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDFVTVTKSEETSWDY 144
Query: 889 LKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDDG 710
LKPE+FA IMDFYSSGQ LFLDS T+A+MDTAI +DDSEIVAMIKELLETRIRPAVQDDG
Sbjct: 145 LKPEVFAVIMDFYSSGQSLFLDSSTAASMDTAIHEDDSEIVAMIKELLETRIRPAVQDDG 204
Query: 709 GDIVYRGSDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDPEGE 530
GDI YRG DP+TGIVKL+MQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELD + E
Sbjct: 205 GDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDGD-E 263
Query: 529 EAALSGQME 503
EA L+GQ+E
Sbjct: 264 EAELTGQLE 272
>ref|NP_566673.1| expressed protein; protein id: At3g20970.1, supported by cDNA:
gi_13899084, supported by cDNA: gi_18377515 [Arabidopsis
thaliana] gi|9294004|dbj|BAB01907.1|
gb|AAD30650.1~gene_id:MFD22.10~similar to unknown protein
[Arabidopsis thaliana]
gi|13899085|gb|AAK48964.1|AF370537_1 Unknown protein
[Arabidopsis thaliana] gi|18377516|gb|AAL66924.1| unknown
protein [Arabidopsis thaliana]
gi|28207822|emb|CAD55561.1| NFU4 protein [Arabidopsis
thaliana]
Length = 283
Score = 315 bits (808), Expect = 6e-85
Identities = 154/188 (81%), Positives = 170/188 (89%)
Frame = -3
Query: 1069 LMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRIFFGSDFVTVTKSEDASWEF 890
LMF+PGKPVMEVGSADFPN RSA+ SPLAKS+++IDG+ R+FFGSDFVTVTKS+D SW+
Sbjct: 93 LMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDI 152
Query: 889 LKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDDG 710
LKPEIFAA+MDFYSSGQPLFLDSQ +AA DTAI +DDSE VAMIKELLETRIRPAVQDDG
Sbjct: 153 LKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKELLETRIRPAVQDDG 212
Query: 709 GDIVYRGSDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDPEGE 530
GDI Y G DP++GIVKL+MQGACSGCPSSSVTLKSGIENMLMHYV EVKGVEQE D E E
Sbjct: 213 GDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGEDE 272
Query: 529 EAALSGQM 506
E LSG+M
Sbjct: 273 EGTLSGEM 280
>pir||A96552 unknown protein, 90320-88994 [imported] - Arabidopsis thaliana
gi|12325368|gb|AAG52627.1|AC024261_14 unknown protein;
90320-88994 [Arabidopsis thaliana]
gi|28207824|emb|CAD55562.1| NFU5 protein [Arabidopsis
thaliana]
Length = 275
Score = 303 bits (776), Expect = 3e-81
Identities = 150/189 (79%), Positives = 167/189 (87%)
Frame = -3
Query: 1069 LMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRIFFGSDFVTVTKSEDASWEF 890
LMF PGKPVME+GSADFPN RSAM+SPLAK++FAIDG+ R+F+GSDFVTVTKS+D +W+
Sbjct: 88 LMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDFVTVTKSDDVTWDI 147
Query: 889 LKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDDG 710
LKP+IFA +MDFYSSGQPLFLDSQ +AA DTAI +DDSE VAMIKELLETRIRP+VQDDG
Sbjct: 148 LKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKELLETRIRPSVQDDG 207
Query: 709 GDIVYRGSDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDPEGE 530
GDI Y G D +TGIVKL+MQGACSGCPSSSVTLKSGIENMLMHYV EVKGVEQE D E E
Sbjct: 208 GDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGE-E 266
Query: 529 EAALSGQME 503
E SG ME
Sbjct: 267 EGTSSGPME 275
>ref|NP_175550.1| unknown protein; protein id: At1g51390.1 [Arabidopsis thaliana]
gi|4836948|gb|AAD30650.1|AC006085_23 Similar to human
CGI-33 protein [Arabidopsis thaliana]
Length = 304
Score = 288 bits (737), Expect = 1e-76
Identities = 151/218 (69%), Positives = 167/218 (76%), Gaps = 29/218 (13%)
Frame = -3
Query: 1069 LMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGI---------------------- 956
LMF PGKPVME+GSADFPN RSAM+SPLAK++FAIDGI
Sbjct: 88 LMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGIPRLLLQHTIVSSSYNPCFVTKI 147
Query: 955 -------TRIFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDT 797
R+F+GSDFVTVTKS+D +W+ LKP+IFA +MDFYSSGQPLFLDSQ +AA DT
Sbjct: 148 VSVDAGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDT 207
Query: 796 AIKDDDSEIVAMIKELLETRIRPAVQDDGGDIVYRGSDPDTGIVKLQMQGACSGCPSSSV 617
AI +DDSE VAMIKELLETRIRP+VQDDGGDI Y G D +TGIVKL+MQGACSGCPSSSV
Sbjct: 208 AIHEDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSV 267
Query: 616 TLKSGIENMLMHYVPEVKGVEQELDPEGEEAALSGQME 503
TLKSGIENMLMHYV EVKGVEQE D E EE SG ME
Sbjct: 268 TLKSGIENMLMHYVSEVKGVEQEFDGE-EEGTSSGPME 304
>dbj|BAC24985.1| unnamed protein product [Mus musculus]
Length = 200
Score = 209 bits (532), Expect = 6e-53
Identities = 98/179 (54%), Positives = 133/179 (73%), Gaps = 1/179 (0%)
Frame = -3
Query: 1069 LMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRIFFGSDFVTVTK-SEDASWE 893
L F PGKPV+E + DFP P +A SPLA+ LF I+G+ +FFG DF+TVTK +E+ W
Sbjct: 14 LKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWN 73
Query: 892 FLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDD 713
LKP+I+A IMDF++SG PL + + ++D E+VAMIKELL+TRIRP VQ+D
Sbjct: 74 LLKPDIYATIMDFFASGLPLVTEETPPPPGEAGSSEEDDEVVAMIKELLDTRIRPTVQED 133
Query: 712 GGDIVYRGSDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDPE 536
GGD++YRG + GIV+L++QG+C+ CPSS +TLKSGI+NML Y+PEV+GVEQ +D +
Sbjct: 134 GGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVMDDD 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 958,254,957
Number of Sequences: 1393205
Number of extensions: 22222659
Number of successful extensions: 58812
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 55220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58632
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64016183864
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
