Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002044A_C01 KMC002044A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06397 isoprenylated protein FP6 - soybean (fragment) gi|53... 89 4e-17
gb|AAO63778.1| unknown [Populus tremuloides] 75 5e-13
gb|AAH06040.1| Unknown (protein for MGC:7642) [Mus musculus] 67 1e-10
emb|CAA71172.1| hypothetical protein [Arabidopsis thaliana] 54 1e-06
ref|NP_171656.1| expressed protein; protein id: At1g01490.1, sup... 54 1e-06
>pir||T06397 isoprenylated protein FP6 - soybean (fragment)
gi|532707|gb|AAA65014.1| unknown
Length = 74
Score = 88.6 bits (218), Expect = 4e-17
Identities = 45/77 (58%), Positives = 51/77 (65%), Gaps = 1/77 (1%)
Frame = -3
Query: 499 KLCHADILSVGPATEEKKDEKKKEEGKKPVEKKKDPKEEMAEIVRAYE-NYYSQMRQPNP 323
K CH +ILSVGPA EE K E+KK E KK DPKEE AE+++ E NYY P
Sbjct: 4 KFCHVEILSVGPAKEEPKKEEKKPEAKK------DPKEEYAELLKVVEANYYQTRHLQYP 57
Query: 322 YYYYRTVEEDPNGCVIC 272
YYY RTVEE+P GCVIC
Sbjct: 58 YYYSRTVEENPTGCVIC 74
>gb|AAO63778.1| unknown [Populus tremuloides]
Length = 132
Score = 74.7 bits (182), Expect = 5e-13
Identities = 38/77 (49%), Positives = 54/77 (69%), Gaps = 2/77 (2%)
Frame = -3
Query: 499 KLCHADILSVGPATE--EKKDEKKKEEGKKPVEKKKDPKEEMAEIVRAYENYYSQMRQPN 326
KLC+ +I++VGPA E +KK+E KKEE KK + KK ++ +AE+V+AY+ Y M
Sbjct: 58 KLCNTEIITVGPAKEPEKKKEEPKKEEPKKQEDPKKKEQDAVAELVKAYKAYNPPM---T 114
Query: 325 PYYYYRTVEEDPNGCVI 275
YY+ R+VE+DPN CVI
Sbjct: 115 TYYHVRSVEDDPNACVI 131
>gb|AAH06040.1| Unknown (protein for MGC:7642) [Mus musculus]
Length = 167
Score = 67.0 bits (162), Expect = 1e-10
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = -3
Query: 454 EKKDEKKKEEGKKPVEKKKDPKEEMAEIVRAYENYYSQMRQPNPYYYYRTVEEDPNGCVI 275
EKK+E KKEEGKK EKK DP + E+V+AY+ Y QM YYY +++EE+PN C I
Sbjct: 113 EKKEEPKKEEGKKEEEKKPDP---VLELVKAYKQYNPQM---TTYYYVQSIEENPNACAI 166
Query: 274 C 272
C
Sbjct: 167 C 167
>emb|CAA71172.1| hypothetical protein [Arabidopsis thaliana]
Length = 101
Score = 53.5 bits (127), Expect = 1e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Frame = -3
Query: 451 KKDEKKKEEGKKPVEKKKD-----------PKEEMAEIVRAYENYYSQMRQPNPYYYYRT 305
KK+E+KKE G K +KKD P + + E+V+AY+ Y + YYY ++
Sbjct: 34 KKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAYKAYNPHL---TTYYYAQS 90
Query: 304 VEEDPNGCVIC 272
+EE+PN CVIC
Sbjct: 91 IEENPNACVIC 101
>ref|NP_171656.1| expressed protein; protein id: At1g01490.1, supported by cDNA:
gi_17380661 [Arabidopsis thaliana]
gi|1922242|emb|CAA71173.1| hypothetical protein
[Arabidopsis thaliana] gi|17380662|gb|AAL36161.1|
unknown protein [Arabidopsis thaliana]
gi|20258999|gb|AAM14215.1| unknown protein [Arabidopsis
thaliana]
Length = 177
Score = 53.5 bits (127), Expect = 1e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Frame = -3
Query: 451 KKDEKKKEEGKKPVEKKKD-----------PKEEMAEIVRAYENYYSQMRQPNPYYYYRT 305
KK+E+KKE G K +KKD P + + E+V+AY+ Y + YYY ++
Sbjct: 110 KKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAYKAYNPHL---TTYYYAQS 166
Query: 304 VEEDPNGCVIC 272
+EE+PN CVIC
Sbjct: 167 IEENPNACVIC 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,478,316
Number of Sequences: 1393205
Number of extensions: 9394093
Number of successful extensions: 57206
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 41188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53439
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
