Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002040A_C01 KMC002040A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49160|CEMA_SOYBN Chloroplast envelope membrane protein gi|74... 32 1.4
ref|NP_716853.1| sensor histidine kinase/response regulator TorS... 31 3.0
ref|NP_034695.1| inhibin beta-C [Mus musculus] gi|2829440|sp|P55... 31 4.0
pir||JC5366 activin beta C - mouse gi|1150506|emb|CAA62347.1| in... 31 4.0
ref|NP_038351.1| peptidoglycan synthetase [Mesostigma viride] gi... 30 5.2
>sp|P49160|CEMA_SOYBN Chloroplast envelope membrane protein gi|7459663|pir||T06346
probable heme-binding protein - soybean chloroplast
gi|984314|gb|AAA80648.1| unknown
Length = 229
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = -1
Query: 194 YWNYCQSILIYTNLRH*DFVCNTIEFLFFSNLFLLDVRITYDDLLKSCDLLHLKHSRTHI 15
+WN QS + +++ + IEF LF LD D+LK C HL++ RT I
Sbjct: 38 WWNTRQSEIFLNDIKEKSILKKFIEF---EELFFLD------DMLKECPETHLQNLRTGI 88
Query: 14 QKK 6
K+
Sbjct: 89 YKE 91
>ref|NP_716853.1| sensor histidine kinase/response regulator TorS [Shewanella
oneidensis MR-1] gi|24346905|gb|AAN54298.1|AE015567_4
sensor histidine kinase/response regulator TorS
[Shewanella oneidensis MR-1]
Length = 1025
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 81 SHIQQKQI*EKQKFNSVTYKISMPQVGIDQYALTVVPILTSEMINDKERNNS 236
+HI Q++ ++ + ++S P+VGID ALT V SE+I D R N+
Sbjct: 255 AHINQQKGTAIEQASEAVTELSAPEVGIDLMALTTV----SELIRDPGRLNA 302
>ref|NP_034695.1| inhibin beta-C [Mus musculus] gi|2829440|sp|P55104|IHBC_MOUSE
Inhibin beta C chain precursor (Activin beta-C chain)
gi|2137119|pir||S70580 activin beta C precursor - mouse
gi|1353651|gb|AAC52723.1| activin beta-C precursor
gi|2072996|gb|AAC53164.1| activin betaC subunit [Mus
musculus] gi|20070689|gb|AAH26140.1| inhibin beta-C [Mus
musculus]
Length = 352
Score = 30.8 bits (68), Expect = 4.0
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = +2
Query: 2 FLFFVCESENASDAEDHNS*VNHRMLFSHPTKTNLRKTKIQ*CYIQNLNASSWYR 166
F+FFV NA+ +N R+L P TNL T Y+ +NAS WY+
Sbjct: 134 FMFFVQFPHNATQT------MNIRVLVLRPYDTNLTLTSQ---YVVQVNASGWYQ 179
>pir||JC5366 activin beta C - mouse gi|1150506|emb|CAA62347.1| inhibin/activin
bC [Mus musculus] gi|1150509|emb|CAA62333.1|
inhibin/activin bC subunit [Mus musculus]
gi|1588313|prf||2208328A inhibin/activin beta-c
Length = 352
Score = 30.8 bits (68), Expect = 4.0
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = +2
Query: 2 FLFFVCESENASDAEDHNS*VNHRMLFSHPTKTNLRKTKIQ*CYIQNLNASSWYR 166
F+FFV NA+ +N R+L P TNL T Y+ +NAS WY+
Sbjct: 134 FMFFVQFPHNATQT------MNIRVLVLRPYDTNLTLTSQ---YVVQVNASGWYQ 179
>ref|NP_038351.1| peptidoglycan synthetase [Mesostigma viride]
gi|14285442|sp|Q9MUV9|FTSI_MESVI Peptidoglycan
synthetase ftsI homolog
gi|7259491|gb|AAF43792.1|AF166114_4 putative
peptidoglycan synthetase [Mesostigma viride]
Length = 598
Score = 30.4 bits (67), Expect = 5.2
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3
Query: 342 VNIQLHLSGEKIKHFQIISDRYC*GPQVTDKEVSNLNCF---FLCHLSSHLSILELLSEH 172
+N+ + L + IK D C Q++D ++N N + F C +SHL+I ++LS
Sbjct: 296 INMAIALEAKAIKKNDFFYDEGC--IQISDTIITNNNYYNKQFACDKNSHLNITDVLSNS 353
Query: 171 IDLYQLEALR 142
++ + L+
Sbjct: 354 SNVGMVHILQ 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,447,702
Number of Sequences: 1393205
Number of extensions: 5741319
Number of successful extensions: 12292
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12288
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
