Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002027A_C01 KMC002027A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175028.1| hypothetical protein; protein id: At1g43630.1 [... 53 2e-06
gb|AAM61006.1| unknown [Arabidopsis thaliana] 52 4e-06
ref|NP_565086.1| expressed protein; protein id: At1g74450.1, sup... 52 4e-06
emb|CAB53491.1| CAA303718.1 protein [Oryza sativa] 51 1e-05
ref|NP_564062.1| expressed protein; protein id: At1g18740.1, sup... 50 2e-05
>ref|NP_175028.1| hypothetical protein; protein id: At1g43630.1 [Arabidopsis
thaliana] gi|25354337|pir||E96499 hypothetical protein
T10P12.8 [imported] - Arabidopsis thaliana
gi|5080766|gb|AAD39276.1|AC007203_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 383
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/57 (45%), Positives = 40/57 (69%)
Frame = -2
Query: 566 EEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYLGTSTHAE 396
E+ +EV++ ++ LM+VCEA + GLD +R+VR+VF +I+ RTE LD LG + E
Sbjct: 327 EKCTLEVKERVQELMNVCEAIKEGLDPFDRKVRDVFHQIVRTRTEALDSLGKLQNQE 383
>gb|AAM61006.1| unknown [Arabidopsis thaliana]
Length = 397
Score = 52.4 bits (124), Expect = 4e-06
Identities = 26/51 (50%), Positives = 37/51 (71%)
Frame = -2
Query: 566 EEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYLG 414
EE++MEV + ++ L + EA + GLD ER+VREVF +I+ RTEGLD +G
Sbjct: 341 EEKEMEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVG 391
>ref|NP_565086.1| expressed protein; protein id: At1g74450.1, supported by cDNA:
108193., supported by cDNA: gi_16226873, supported by
cDNA: gi_18176415 [Arabidopsis thaliana]
gi|25354336|pir||D96773 unknown protein F1M20.13
[imported] - Arabidopsis thaliana
gi|12324802|gb|AAG52364.1|AC011765_16 unknown protein;
39057-40250 [Arabidopsis thaliana]
gi|16226874|gb|AAL16287.1|AF428357_1 At1g74450/F1M20_13
[Arabidopsis thaliana] gi|18176416|gb|AAL60040.1|
unknown protein [Arabidopsis thaliana]
gi|22136856|gb|AAM91772.1| unknown protein [Arabidopsis
thaliana]
Length = 397
Score = 52.4 bits (124), Expect = 4e-06
Identities = 26/51 (50%), Positives = 37/51 (71%)
Frame = -2
Query: 566 EEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYLG 414
EE++MEV + ++ L + EA + GLD ER+VREVF +I+ RTEGLD +G
Sbjct: 341 EEKEMEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVG 391
>emb|CAB53491.1| CAA303718.1 protein [Oryza sativa]
Length = 425
Score = 50.8 bits (120), Expect = 1e-05
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -2
Query: 566 EEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYLGTSTHA 399
+++ EV++ + L+ VC + + GLD LERQVRE+F +++ RTE LDYL +A
Sbjct: 369 DDKDSEVQEATQELVQVCGSLKDGLDPLERQVREMFHRVVRTRTEILDYLSRPHNA 424
>ref|NP_564062.1| expressed protein; protein id: At1g18740.1, supported by cDNA:
40753., supported by cDNA: gi_14517471 [Arabidopsis
thaliana] gi|25354338|pir||C86321 hypothetical protein
F6A14.15 - Arabidopsis thaliana
gi|6730709|gb|AAF27104.1|AC011809_13 Unknown protein
[Arabidopsis thaliana] gi|14517472|gb|AAK62626.1|
At1g18740/F6A14_15 [Arabidopsis thaliana]
gi|22136562|gb|AAM91067.1| At1g18740/F6A14_15
[Arabidopsis thaliana]
Length = 382
Score = 50.1 bits (118), Expect = 2e-05
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = -2
Query: 566 EEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYL 417
+++++EV+Q + L+ V EA R GLD ER+VREVF +I+ RTE LD L
Sbjct: 333 DDKEVEVKQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDSL 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,326,436
Number of Sequences: 1393205
Number of extensions: 10644517
Number of successful extensions: 28398
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28360
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
