Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002019A_C01 KMC002019A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA09869.1| agCP11858 [Anopheles gambiae str. PEST] 37 0.18
ref|NP_240875.1| BH0009~unknown [Bacillus halodurans] gi|2537050... 35 0.54
dbj|BAA21718.1| arrestin [Oryzias latipes] 33 2.7
ref|NP_762964.1| AraC-type DNA-binding domain-containing protein... 32 5.9
gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii] 32 5.9
>gb|EAA09869.1| agCP11858 [Anopheles gambiae str. PEST]
Length = 462
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 318 NTTICCFSINIDPIVPFPFYRSNSSLSDPIPDKCIQT*ITSLKLMFTRSNSYQIQFWPDP 497
N T FSI+ID I P+Y N S P+PD + + + ++ +SY I P
Sbjct: 269 NGTELNFSIHIDSIALGPYYNPNLSPDQPVPDTLVNSQNYERNVYYSPLSSYHIYSLPAS 328
Query: 498 ILLTP 512
+L P
Sbjct: 329 LLRDP 333
>ref|NP_240875.1| BH0009~unknown [Bacillus halodurans] gi|25370509|pir||A83651
hypothetical protein BH0009 [imported] - Bacillus
halodurans (strain C-125) gi|5672655|dbj|BAA82693.1|
ORF15 [Bacillus halodurans] gi|10172621|dbj|BAB03728.1|
BH0009 [Bacillus halodurans]
Length = 268
Score = 35.4 bits (80), Expect = 0.54
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Frame = -3
Query: 436 VIYVWIHLSGIGSDRLELDL*KGKGTIGSILMLKQQIVVLGWIQFWGQNWIINI*HPNIN 257
+IY W+H G G + + +I SI LK+ VV G+IQF Q I N + +
Sbjct: 140 IIYSWLHTRGRGEKTINI------RSISSI-QLKEPAVVAGYIQFTFQGSIENQSRSSFS 192
Query: 256 G---------DGKITFEVFKRGSGLIQ--RASKHTPLLSR*NPRGDKELK 140
K FE FKR LI+ + + P + + G ELK
Sbjct: 193 AIDDQNTIAISNKHQFEDFKRAKALIESYQNQLYAPQIQSSSTSGADELK 242
>dbj|BAA21718.1| arrestin [Oryzias latipes]
Length = 387
Score = 33.1 bits (74), Expect = 2.7
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +3
Query: 3 RVSAEVCSPFEKLLKDI-------TNVLLLTNSKYQKRKQINCHHLSMLLSTTFS---SL 152
+ + E+ + + +KDI TNV+L +N KY K S+ TT +L
Sbjct: 215 KANVEITNSSSRNIKDISLSVEQVTNVVLYSNDKYVKSVAKEETDDSVPSGTTLKKEYTL 274
Query: 153 SP-LGFHLLRRGVCLDARWIRPDPRLKTSNVI 245
P L ++ RRG+ LD R D L +S+++
Sbjct: 275 HPLLAYNKDRRGIALDGRLKHEDTNLASSSIV 306
>ref|NP_762964.1| AraC-type DNA-binding domain-containing protein [Vibrio vulnificus
CMCP6] gi|27359006|gb|AAO07954.1|AE016811_195 AraC-type
DNA-binding domain-containing protein [Vibrio vulnificus
CMCP6]
Length = 282
Score = 32.0 bits (71), Expect = 5.9
Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 3/77 (3%)
Frame = +3
Query: 36 KLLKDITNVLLLTNSKYQKRKQINCHHLSMLLSTTFSSLSPLGFHLLRRGVCLDARWIRP 215
+++ DI + + S Y C + + TF+ L FH++RRG C W
Sbjct: 2 EVMSDILRAIRVVGSVYF------CSQVEAPWTKTFNDLDHASFHMIRRGAC----WANV 51
Query: 216 DPRLKTSN---VIFPSP 257
D R++ N +IF P
Sbjct: 52 DGRIEQLNAGDLIFLGP 68
>gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2974
Score = 32.0 bits (71), Expect = 5.9
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 2/67 (2%)
Frame = +2
Query: 386 FKSIRSNS**MYPNINHVTQTHVYQIQFISDPI--LARSNSTNAEPNTHENIHLLLPPQE 559
F SNS NI H T H+Y I+ I + L +S+S+N + + +P +E
Sbjct: 1328 FAICTSNSKSNNDNIFHRTSNHLYNIEIIKLNLKKLLKSSSSNKHTPNNNILENCIPIRE 1387
Query: 560 DFRLQQS 580
DF+L +
Sbjct: 1388 DFQLNNN 1394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,791,987
Number of Sequences: 1393205
Number of extensions: 12289992
Number of successful extensions: 32874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32868
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
