Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002015A_C02 KMC002015A_c02
(845 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91902.1| putative FtsH protease [Oryza sativa (japonica c... 62 1e-08
dbj|BAB91903.1| putative FtsH protease [Oryza sativa (japonica c... 61 2e-08
ref|NP_073127.1| cell division protein (ftsH) [Mycoplasma genita... 60 4e-08
ref|ZP_00072536.1| hypothetical protein [Trichodesmium erythraeu... 59 7e-08
ref|NP_602769.1| Cell division protein ftsH [Fusobacterium nucle... 59 7e-08
>dbj|BAB91902.1| putative FtsH protease [Oryza sativa (japonica cultivar-group)]
Length = 709
Score = 61.6 bits (148), Expect = 1e-08
Identities = 37/102 (36%), Positives = 57/102 (55%)
Frame = -1
Query: 845 KKLIDEMVISMAASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFD 666
K+++ + +SMA AE I G V +GAS DF A +AR +V YGMS G ++
Sbjct: 528 KQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYN 587
Query: 665 FENLSHLKLSHRTRYEIDEEVNFLLDEAWNMAKELIIVHKAQ 540
+E+ +S TR I++EV LL+ A+N AK ++ H +
Sbjct: 588 YED-DGKSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKE 628
>dbj|BAB91903.1| putative FtsH protease [Oryza sativa (japonica cultivar-group)]
Length = 715
Score = 60.8 bits (146), Expect = 2e-08
Identities = 34/102 (33%), Positives = 56/102 (54%)
Frame = -1
Query: 845 KKLIDEMVISMAASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFD 666
K+++ + + M AE I G V +GAS DF +A +AR +V YGMS G ++
Sbjct: 535 KQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYN 594
Query: 665 FENLSHLKLSHRTRYEIDEEVNFLLDEAWNMAKELIIVHKAQ 540
+E+ +S TR I++EV ++ A+N AK ++I H +
Sbjct: 595 YED-DGKSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKE 635
>ref|NP_073127.1| cell division protein (ftsH) [Mycoplasma genitalium]
gi|1346047|sp|P47695|FTSH_MYCGE Cell division protein
ftsH homolog gi|1361466|pir||E64250 cell division
protein ftsH - Mycoplasma genitalium
gi|3845051|gb|AAC72477.1| cell division protein (ftsH)
[Mycoplasma genitalium]
Length = 702
Score = 60.1 bits (144), Expect = 4e-08
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Frame = -1
Query: 839 LIDEMVISMAASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFDFE 660
L+ + +M +AE EI G + TGAS DF++A IAR +V GMS Y +
Sbjct: 542 LLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYVPSQ 601
Query: 659 NL--SHLKL-SHRTRYEIDEEVNFLLDEAWNMAKELIIVHKAQATFWLPVLYLRKRHYRR 489
S++KL S +T +ID E+NF+++E + AK +I ++ + + L + + +
Sbjct: 602 GTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAET-ILK 660
Query: 488 MTLPFL*RWLPVPPETLL 435
+ F+ + +PPE LL
Sbjct: 661 SDIDFIHKNTKLPPEILL 678
>ref|ZP_00072536.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 613
Score = 59.3 bits (142), Expect = 7e-08
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Frame = -1
Query: 839 LIDEMVISMAASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFDFE 660
L ++M +++ AE + G E V TGAS D + +AR +V +GMS GP +
Sbjct: 471 LQNQMAVALGGRLAEEIVFGDEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVALGRQ 530
Query: 659 N---------LSHLKLSHRTRYEIDEEVNFLLDEAWNMAKELII 555
N +S S T ID+EV+ L+D+A+ AKE+++
Sbjct: 531 NGNMFLGRDIMSERDFSEETAAAIDDEVSNLVDQAYRRAKEVLV 574
>ref|NP_602769.1| Cell division protein ftsH [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19713237|gb|AAL94068.1| Cell
division protein ftsH [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 714
Score = 59.3 bits (142), Expect = 7e-08
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Frame = -1
Query: 845 KKLIDEMVISMAASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFD 666
K ++D + +AE I G E + GA D + A +IA+DIV YGM+ FGP + +
Sbjct: 581 KYMLDRIARYFGGRAAEEIIFGKENITDGAGSDIYYATLIAKDIVTKYGMTEKFGPVFLE 640
Query: 665 FEN----LSHLKLSHRTRYEIDEEVNFLLDEAWNMAKELIIVHK 546
L S +T E+D+E+ ++ E ++ AK +++ ++
Sbjct: 641 ATEEDYMLQRKYYSEQTGKEVDDEIRKIITEQYSRAKNILLENR 684
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,782,364
Number of Sequences: 1393205
Number of extensions: 14632627
Number of successful extensions: 33540
Number of sequences better than 10.0: 244
Number of HSP's better than 10.0 without gapping: 32321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33479
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
