Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002012A_C02 KMC002012A_c02
(1194 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK49592.1|AF372876_1 AT3g15820/MSJ11_22 [Arabidopsis thalian... 354 1e-96
ref|NP_566527.1| expressed protein; protein id: At3g15820.1, sup... 354 1e-96
ref|NP_188204.1| unknown protein; protein id: At3g15830.1 [Arabi... 337 2e-91
gb|EAA34623.1| predicted protein [Neurospora crassa] 46 0.001
ref|NP_216714.1| mmpS3 [Mycobacterium tuberculosis H37Rv] gi|158... 46 0.001
>gb|AAK49592.1|AF372876_1 AT3g15820/MSJ11_22 [Arabidopsis thaliana] gi|28416535|gb|AAO42798.1|
At3g15820/MSJ11_22 [Arabidopsis thaliana]
Length = 255
Score = 354 bits (909), Expect = 1e-96
Identities = 176/232 (75%), Positives = 196/232 (83%), Gaps = 2/232 (0%)
Frame = -1
Query: 1011 TEASFMKWTIADAVHVATHHWIPCLFGLSLLFFMAVEYTLFMIPPSSPPFDLGFIATQSL 832
++ASF WT D V+V +HWIPC+F LLFFM VEYTL MIP S PFDLGF+ T+SL
Sbjct: 23 SKASFTTWTARDIVYVVRYHWIPCMFAAGLLFFMGVEYTLQMIPARSEPFDLGFVVTRSL 82
Query: 831 HRALESSPNLNTLLAALNTVFVGMQTSYILWTWLVEGRPRATISALFMFTCRGILGYSTQ 652
+R L SSP+LNT+LAALNTVFVGMQT+YI+WTWLVEGR RATI+ALFMFTCRGILGYSTQ
Sbjct: 83 NRVLASSPDLNTVLAALNTVFVGMQTTYIVWTWLVEGRARATIAALFMFTCRGILGYSTQ 142
Query: 651 LPLPQGFLGSGVDFPVGNVSFFLFFSGHVAGSVIASLDMRRMQRWELAWTFDVLNMLQAV 472
LPLPQ FLGSGVDFPVGNVSFFLFFSGHVAGS+IASLDMRRMQR LA FD+LN+LQ++
Sbjct: 143 LPLPQDFLGSGVDFPVGNVSFFLFFSGHVAGSMIASLDMRRMQRLRLAMVFDILNVLQSI 202
Query: 471 RLLGTRGHYTIDLAVGLGAGFLFDSLAGKYEECKRKTTSANGFS--SKHALV 322
RLLGTRGHYTIDLAVG+GAG LFDSLAGKYEE K GFS SK +LV
Sbjct: 203 RLLGTRGHYTIDLAVGVGAGILFDSLAGKYEEMMSKRHLGTGFSLISKDSLV 254
>ref|NP_566527.1| expressed protein; protein id: At3g15820.1, supported by cDNA:
21882., supported by cDNA: gi_13926234 [Arabidopsis
thaliana] gi|11994354|dbj|BAB02313.1|
gene_id:MSJ11.22~unknown protein [Arabidopsis thaliana]
gi|21554290|gb|AAM63365.1| unknown [Arabidopsis thaliana]
Length = 301
Score = 354 bits (909), Expect = 1e-96
Identities = 176/232 (75%), Positives = 196/232 (83%), Gaps = 2/232 (0%)
Frame = -1
Query: 1011 TEASFMKWTIADAVHVATHHWIPCLFGLSLLFFMAVEYTLFMIPPSSPPFDLGFIATQSL 832
++ASF WT D V+V +HWIPC+F LLFFM VEYTL MIP S PFDLGF+ T+SL
Sbjct: 69 SKASFTTWTARDIVYVVRYHWIPCMFAAGLLFFMGVEYTLQMIPARSEPFDLGFVVTRSL 128
Query: 831 HRALESSPNLNTLLAALNTVFVGMQTSYILWTWLVEGRPRATISALFMFTCRGILGYSTQ 652
+R L SSP+LNT+LAALNTVFVGMQT+YI+WTWLVEGR RATI+ALFMFTCRGILGYSTQ
Sbjct: 129 NRVLASSPDLNTVLAALNTVFVGMQTTYIVWTWLVEGRARATIAALFMFTCRGILGYSTQ 188
Query: 651 LPLPQGFLGSGVDFPVGNVSFFLFFSGHVAGSVIASLDMRRMQRWELAWTFDVLNMLQAV 472
LPLPQ FLGSGVDFPVGNVSFFLFFSGHVAGS+IASLDMRRMQR LA FD+LN+LQ++
Sbjct: 189 LPLPQDFLGSGVDFPVGNVSFFLFFSGHVAGSMIASLDMRRMQRLRLAMVFDILNVLQSI 248
Query: 471 RLLGTRGHYTIDLAVGLGAGFLFDSLAGKYEECKRKTTSANGFS--SKHALV 322
RLLGTRGHYTIDLAVG+GAG LFDSLAGKYEE K GFS SK +LV
Sbjct: 249 RLLGTRGHYTIDLAVGVGAGILFDSLAGKYEEMMSKRHLGTGFSLISKDSLV 300
>ref|NP_188204.1| unknown protein; protein id: At3g15830.1 [Arabidopsis thaliana]
gi|11994355|dbj|BAB02314.1| gene_id:MSJ11.23~unknown
protein [Arabidopsis thaliana]
Length = 296
Score = 337 bits (864), Expect = 2e-91
Identities = 160/216 (74%), Positives = 186/216 (86%)
Frame = -1
Query: 1011 TEASFMKWTIADAVHVATHHWIPCLFGLSLLFFMAVEYTLFMIPPSSPPFDLGFIATQSL 832
++ASFM WT+ D ++VA HHWIPCLF ++FF VEYT M P SS PFDLGF+AT+ L
Sbjct: 64 SKASFMTWTMHDIIYVARHHWIPCLFAAGVMFFTVVEYTFQMTPASSQPFDLGFVATRYL 123
Query: 831 HRALESSPNLNTLLAALNTVFVGMQTSYILWTWLVEGRPRATISALFMFTCRGILGYSTQ 652
H L SSPNLNT+LAALNT+ VGMQT+YI TW VEGRPRATI+ALFMFTCRGILGYSTQ
Sbjct: 124 HSILASSPNLNTVLAALNTILVGMQTTYIGCTWAVEGRPRATIAALFMFTCRGILGYSTQ 183
Query: 651 LPLPQGFLGSGVDFPVGNVSFFLFFSGHVAGSVIASLDMRRMQRWELAWTFDVLNMLQAV 472
LP PQ FLGSGVD+PVGNVSFFLF+SGHVAGS+IASLDM+RMQR+ LA FD+LN+LQ++
Sbjct: 184 LPRPQEFLGSGVDYPVGNVSFFLFYSGHVAGSMIASLDMKRMQRFRLAMVFDILNVLQSI 243
Query: 471 RLLGTRGHYTIDLAVGLGAGFLFDSLAGKYEECKRK 364
RLLGTRGHYTID+AVG+GAG LFDSLAGKYEE ++
Sbjct: 244 RLLGTRGHYTIDIAVGVGAGILFDSLAGKYEEMSKR 279
>gb|EAA34623.1| predicted protein [Neurospora crassa]
Length = 452
Score = 46.2 bits (108), Expect = 0.001
Identities = 29/83 (34%), Positives = 39/83 (46%)
Frame = -2
Query: 1160 SQP*TAAPPLPPVTPPSSTTGAPTKHQHLLLLPPQIPPWRKASPPPCTTTLKPPS*NGPS 981
S P +A PP P PP ++ AP+ L PP PP PPP + +PP PS
Sbjct: 237 SAPPSAPPPPPSFAPPPPSSAAPS----LPPAPPPPPPTAAPRPPPAPSRSQPPPPPPPS 292
Query: 980 PTRSTSPRTIGYLACSASASSSS 912
+ S + I A +ASS+S
Sbjct: 293 SSTSNLSQNIAVQAAIRAASSAS 315
>ref|NP_216714.1| mmpS3 [Mycobacterium tuberculosis H37Rv] gi|15841689|ref|NP_336726.1|
hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|1722916|sp|Q10390|MMS3_MYCTU Putative membrane protein
MMPS3 gi|7478412|pir||G70784 probable mmpS3 protein -
Mycobacterium tuberculosis (strain H37RV)
gi|1237051|emb|CAA94267.1| mmpS3 [Mycobacterium
tuberculosis H37Rv] gi|13881944|gb|AAK46540.1|
hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length = 299
Score = 46.2 bits (108), Expect = 0.001
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -2
Query: 1145 AAPPLPPVTPPSSTTGAPTKHQHLLLL-PPQIPPWRKASPPPCTTT--LKPPS*NGPSPT 975
A PP PP PP++ T+ Q + + PP PP +PPP TTT PP P+ T
Sbjct: 151 APPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPP----PTTT 206
Query: 974 RSTSPRTIGYLACSASA 924
T PR + Y A
Sbjct: 207 TPTGPRQVTYSVTGTKA 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,206,504,031
Number of Sequences: 1393205
Number of extensions: 32542228
Number of successful extensions: 169257
Number of sequences better than 10.0: 643
Number of HSP's better than 10.0 without gapping: 118154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155565
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 74674505184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
