Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002006A_C01 KMC002006A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564058.1| expressed protein; protein id: At1g18600.1, sup... 87 2e-26
gb|AAO41899.1| unknown protein [Arabidopsis thaliana] 43 7e-10
dbj|BAB92375.1| P0512C01.30 [Oryza sativa (japonica cultivar-gro... 41 8e-09
ref|NP_177554.1| hypothetical protein; protein id: At1g74140.1 [... 40 4e-07
ref|NP_177553.1| hypothetical protein; protein id: At1g74130.1 [... 43 1e-06
>ref|NP_564058.1| expressed protein; protein id: At1g18600.1, supported by cDNA:
232413., supported by cDNA: gi_13877606, supported by
cDNA: gi_20148712 [Arabidopsis thaliana]
gi|25372899|pir||F86319 Hypothetical protein -
Arabidopsis thaliana gi|9795596|gb|AAF98414.1|AC026238_6
Hypothetical protein [Arabidopsis thaliana]
gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein
[Arabidopsis thaliana] gi|20148713|gb|AAM10247.1|
unknown protein [Arabidopsis thaliana]
gi|21592397|gb|AAM64348.1| unknown [Arabidopsis
thaliana]
Length = 336
Score = 86.7 bits (213), Expect(2) = 2e-26
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Frame = -1
Query: 468 IGIAGQVEL*MQLCCFRYSSFQKQPSISIYL---YPVPAILLGVFMIGKDMLRIMEGDTS 298
+G +G V M L F + P ++YL PVPA+LLG+F+IGKD+LRI EG+++
Sbjct: 256 LGASGAVNAIMLLDIFLH------PRATLYLEFFIPVPAMLLGIFLIGKDILRITEGNSN 309
Query: 297 ISGSAHLGGATVGAIAWALVRKGRF 223
ISGSAHLGGA V AIAWA +RKGRF
Sbjct: 310 ISGSAHLGGAAVAAIAWARIRKGRF 334
Score = 54.3 bits (129), Expect(2) = 2e-26
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -2
Query: 608 VVSNLGPGFLLKLYLAGPVGGSVFYLVHQAYKAQSS 501
+ N GP FLLKLYLAG +GGSVFYL+H AY A +S
Sbjct: 204 IARNFGPQFLLKLYLAGALGGSVFYLIHHAYMAATS 239
>gb|AAO41899.1| unknown protein [Arabidopsis thaliana]
Length = 322
Score = 42.7 bits (99), Expect(2) = 7e-10
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = -1
Query: 396 PSISIY---LYPVPAILLGVFMIGKDMLRIMEG--DTSISGSAHLGGATVGAIAWALVRK 232
P ++ Y + VP + G++ +G ++++++EG + +++ LGG V IAWA +RK
Sbjct: 259 PKVTTYFGLMLRVP-VFAGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARIRK 317
Query: 231 GRF 223
GRF
Sbjct: 318 GRF 320
Score = 42.4 bits (98), Expect(2) = 7e-10
Identities = 20/41 (48%), Positives = 26/41 (62%)
Frame = -2
Query: 611 QVVSNLGPGFLLKLYLAGPVGGSVFYLVHQAYKAQSSKGWR 489
++ + GP +LLKLY AG +GGSVF+L A S KG R
Sbjct: 187 RIARSFGPRYLLKLYFAGALGGSVFFLSSHALSVISLKGQR 227
Score = 33.5 bits (75), Expect = 2.3
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 562 LGQLVVLFSTWCIKPIRLNHQRAGDLAIIQKNW------HCGASGAVNAVMLLQIFLFPK 401
LG V S+ + I L QR ++ K+ GA+G V A+ LL + L+PK
Sbjct: 206 LGGSVFFLSSHALSVISLKGQR-----VVPKDQLKVPIGKLGANGPVYAITLLDMLLYPK 260
Query: 400 ATIYFDLFI 374
T YF L +
Sbjct: 261 VTTYFGLML 269
>dbj|BAB92375.1| P0512C01.30 [Oryza sativa (japonica cultivar-group)]
Length = 171
Score = 41.2 bits (95), Expect(2) = 8e-09
Identities = 22/46 (47%), Positives = 30/46 (64%), Gaps = 4/46 (8%)
Frame = -2
Query: 617 FKQVVSNL-GPGFLLKLYLAGPVGGSVFYLVHQAYKA---QSSKGW 492
F +SN+ GP FLLKLY+AG + GS F+L+ +A+ A Q GW
Sbjct: 63 FGSSISNMFGPAFLLKLYVAGALAGSAFFLLEKAFLAPRRQFYGGW 108
Score = 40.4 bits (93), Expect(2) = 8e-09
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -3
Query: 457 GASGAVNAVMLLQIFLFPKATIYFDLFIPSSCNPVGSL 344
GAS A NA++LL IFL+PK +Y FIP +G++
Sbjct: 117 GASAAANAIILLDIFLYPKKLVYLYFFIPIPAAIMGAI 154
Score = 31.6 bits (70), Expect = 8.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -1
Query: 396 PSISIYLY---PVPAILLGVFMIGKDMLRI 316
P +YLY P+PA ++G +IG D+LR+
Sbjct: 134 PKKLVYLYFFIPIPAAIMGAILIGADLLRV 163
>ref|NP_177554.1| hypothetical protein; protein id: At1g74140.1 [Arabidopsis
thaliana] gi|25372898|pir||E96769 hypothetical protein
F9E11.9 [imported] - Arabidopsis thaliana
gi|12323817|gb|AAG51876.1|AC079678_6 hypothetical
protein; 30326-27670 [Arabidopsis thaliana]
Length = 277
Score = 39.7 bits (91), Expect(2) = 4e-07
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Frame = -1
Query: 390 ISIYLYPVP----AILLGVFMI---GKDMLRIMEGDTS--ISGSAHLGGATVGAIAWALV 238
+ +++YP A++L V I G ++L I EG + S S LGG V A+AWA +
Sbjct: 213 LDMFIYPKVTTYFALMLRVHRIINLGVEILNIPEGGPNHIASSSGQLGGVVVAAMAWARI 272
Query: 237 RKGRF 223
+KGRF
Sbjct: 273 KKGRF 277
Score = 36.2 bits (82), Expect(2) = 4e-07
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -2
Query: 608 VVSNLGPGFLLKLYLAGPVGGSVFYLVHQAYKA 510
+ LGP +LLKLY AG +GGSV +L + A A
Sbjct: 147 IARTLGPLYLLKLYFAGALGGSVCFLSYHALLA 179
Score = 33.1 bits (74), Expect = 3.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -3
Query: 457 GASGAVNAVMLLQIFLFPKATIYFDLFI 374
GA G++ A+ LL +F++PK T YF L +
Sbjct: 202 GADGSMFAIALLDMFIYPKVTTYFALML 229
>ref|NP_177553.1| hypothetical protein; protein id: At1g74130.1 [Arabidopsis
thaliana] gi|25372896|pir||D96769 hypothetical protein
F9E11.2 [imported] - Arabidopsis thaliana
gi|12323818|gb|AAG51877.1|AC079678_7 hypothetical
protein; 33567-31357 [Arabidopsis thaliana]
Length = 305
Score = 42.7 bits (99), Expect(2) = 1e-06
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = -1
Query: 396 PSISIY---LYPVPAILLGVFMIGKDMLRIMEG--DTSISGSAHLGGATVGAIAWALVRK 232
P ++ Y + VP + G++ +G ++++++EG + +++ LGG V IAWA +RK
Sbjct: 242 PKVTTYFGLMLRVP-VFAGIYSLGLNIIKMLEGKNNNTLTSLDQLGGVVVAVIAWARIRK 300
Query: 231 GRF 223
GRF
Sbjct: 301 GRF 303
Score = 33.5 bits (75), Expect = 2.3
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 562 LGQLVVLFSTWCIKPIRLNHQRAGDLAIIQKNW------HCGASGAVNAVMLLQIFLFPK 401
LG V S+ + I L QR ++ K+ GA+G V A+ LL + L+PK
Sbjct: 189 LGGSVFFLSSHALSVISLKGQR-----VVPKDQLKVPIGKLGANGPVYAITLLDMLLYPK 243
Query: 400 ATIYFDLFI 374
T YF L +
Sbjct: 244 VTTYFGLML 252
Score = 31.6 bits (70), Expect(2) = 1e-06
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 584 FLLKLYLAGPVGGSVFYLVHQAYKAQSSKGWR 489
F +LY AG +GGSVF+L A S KG R
Sbjct: 179 FGARLYFAGALGGSVFFLSSHALSVISLKGQR 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,476,733
Number of Sequences: 1393205
Number of extensions: 11092644
Number of successful extensions: 35452
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 32518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35198
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
