Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001991A_C01 KMC001991A_c01
(718 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194400.1| fimbrin-like protein (ATFIM1); protein id: At4g... 106 3e-22
gb|AAC39359.1| fimbrin-like protein [Arabidopsis thaliana] 106 3e-22
gb|AAB97843.1| fimbrin 1 [Arabidopsis thaliana] 106 3e-22
ref|NP_198420.1| fimbrin; protein id: At5g35700.1, supported by ... 105 5e-22
ref|NP_200351.1| fimbrin; protein id: At5g55400.1 [Arabidopsis t... 103 2e-21
>ref|NP_194400.1| fimbrin-like protein (ATFIM1); protein id: At4g26700.1, supported
by cDNA: gi_2905892 [Arabidopsis thaliana]
gi|7441365|pir||T04793 probable fimbrin ATFIM1 -
Arabidopsis thaliana gi|4455193|emb|CAB36516.1|
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
gi|7269522|emb|CAB79525.1| fimbrin-like protein (ATFIM1)
[Arabidopsis thaliana]
Length = 687
Score = 106 bits (265), Expect = 3e-22
Identities = 58/104 (55%), Positives = 72/104 (68%), Gaps = 14/104 (13%)
Frame = -3
Query: 716 DEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQ-HSEENS--- 549
D++K+LN+TYI+SVARKLGCS+FLLPEDI+EVNQKMIL LTASIMYWSLQ HS E+S
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRESSDSS 632
Query: 548 ----------TPEASPVASADGENDTDLISSEVSHLAIDDNDSE 447
+ +SP S E + +S EV+ LA+ D SE
Sbjct: 633 STQSTTTTCTSTASSPAPSVTEEEEVSSLSGEVTSLAVGDAVSE 676
>gb|AAC39359.1| fimbrin-like protein [Arabidopsis thaliana]
Length = 687
Score = 106 bits (265), Expect = 3e-22
Identities = 58/104 (55%), Positives = 72/104 (68%), Gaps = 14/104 (13%)
Frame = -3
Query: 716 DEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQ-HSEENS--- 549
D++K+LN+TYI+SVARKLGCS+FLLPEDI+EVNQKMIL LTASIMYWSLQ HS E+S
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRESSDSS 632
Query: 548 ----------TPEASPVASADGENDTDLISSEVSHLAIDDNDSE 447
+ +SP S E + +S EV+ LA+ D SE
Sbjct: 633 STQSTTTTCTSTASSPAPSVTEEEEVSSLSGEVTSLAVGDAVSE 676
>gb|AAB97843.1| fimbrin 1 [Arabidopsis thaliana]
Length = 509
Score = 106 bits (265), Expect = 3e-22
Identities = 58/104 (55%), Positives = 72/104 (68%), Gaps = 14/104 (13%)
Frame = -3
Query: 716 DEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQ-HSEENS--- 549
D++K+LN+TYI+SVARKLGCS+FLLPEDI+EVNQKMIL LTASIMYWSLQ HS E+S
Sbjct: 395 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRESSDSS 454
Query: 548 ----------TPEASPVASADGENDTDLISSEVSHLAIDDNDSE 447
+ +SP S E + +S EV+ LA+ D SE
Sbjct: 455 STQSTTTTCTSTASSPAPSVTEEEEVSSLSGEVTSLAVGDAVSE 498
>ref|NP_198420.1| fimbrin; protein id: At5g35700.1, supported by cDNA: gi_15027846
[Arabidopsis thaliana] gi|9758643|dbj|BAB09267.1|
fimbrin [Arabidopsis thaliana]
gi|15027847|gb|AAK76454.1| putative fimbrin protein
[Arabidopsis thaliana] gi|23296651|gb|AAN13139.1|
putative fimbrin protein [Arabidopsis thaliana]
Length = 687
Score = 105 bits (263), Expect = 5e-22
Identities = 58/104 (55%), Positives = 76/104 (72%)
Frame = -3
Query: 716 DEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQHSEENSTPEA 537
+EDKKLN+TYIISVARKLGCSIFLLPEDIIEVNQKM+L L ASIMYWSLQ + S E+
Sbjct: 573 EEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLILAASIMYWSLQ---QQSDTES 629
Query: 536 SPVASADGENDTDLISSEVSHLAIDDNDSENASS*VGNEEISLK 405
+ A + D + ++ E+S+L+ID + +S V ++E+ K
Sbjct: 630 TVSEDATDDGDANSVAGEISNLSID--GASESSPTVQDQELLTK 671
>ref|NP_200351.1| fimbrin; protein id: At5g55400.1 [Arabidopsis thaliana]
gi|9758172|dbj|BAB08557.1| fimbrin [Arabidopsis
thaliana]
Length = 714
Score = 103 bits (258), Expect = 2e-21
Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 24/112 (21%)
Frame = -3
Query: 716 DEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQHSEENS---- 549
D++K+LN+TYI+SVARKLGCS+FLLPEDI+EVNQKMIL LTASIMYWSLQ +S
Sbjct: 574 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQQQSSSSESSS 633
Query: 548 --------------------TPEASPVASADGENDTDLISSEVSHLAIDDND 453
+ +ASP S GE++ ++ EVS L I++++
Sbjct: 634 SSSDSSSTHSTTTTCTSTCTSTDASPAPSVTGEDEVSSLNGEVSSLTIEEDN 685
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,729,379
Number of Sequences: 1393205
Number of extensions: 13246770
Number of successful extensions: 30009
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 28951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29994
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
