Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001988A_C01 KMC001988A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191408.1| putative protein; protein id: At3g58490.1 [Arab... 219 1e-56
ref|NP_376948.1| 542aa long hypothetical protein [Sulfolobus tok... 36 0.40
gb|EAA41680.1| GLP_385_39670_37664 [Giardia lamblia ATCC 50803] 32 4.4
ref|NP_717002.1| hypothetical protein [Shewanella oneidensis MR-... 32 5.8
ref|NP_704202.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.8
>ref|NP_191408.1| putative protein; protein id: At3g58490.1 [Arabidopsis thaliana]
gi|11357447|pir||T45669 hypothetical protein F14P22.80 -
Arabidopsis thaliana gi|6735366|emb|CAB68187.1| putative
protein [Arabidopsis thaliana]
Length = 416
Score = 219 bits (559), Expect = 1e-56
Identities = 106/154 (68%), Positives = 129/154 (82%), Gaps = 4/154 (2%)
Frame = -1
Query: 583 TPSFEFHTAFNGVALGIVSGVQQTYHLFHHDSVPHLFSSELTIPAYVGRVLLGIPTILIV 404
TPS+E+HTAFNGV LGIV+GVQQTY FHH++ P +FS EL I +Y+GRV++GIPTIL+V
Sbjct: 263 TPSYEYHTAFNGVTLGIVTGVQQTYSQFHHEAAPRIFSPELPISSYLGRVMVGIPTILLV 322
Query: 403 KFCSKALAKWTLPVVANTLGIPIKSTSYIPTLNGSTAGKTSDKLKGG-GYLQKL---FSH 236
KFCSK+LAKWTLP+V+N LGIPI+S+ YIP L G +GK +D+ K GYLQKL SH
Sbjct: 323 KFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYASGKKTDEPKNSVGYLQKLCEFLSH 382
Query: 235 KAFDVDTGIRFLQYAGLAWSVVDLVPSLFSYMSL 134
+FD+DTGIRF QYAGLAWSVVDLVPSLFSY++L
Sbjct: 383 DSFDIDTGIRFFQYAGLAWSVVDLVPSLFSYVNL 416
>ref|NP_376948.1| 542aa long hypothetical protein [Sulfolobus tokodaii]
gi|15622064|dbj|BAB66057.1| 542aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 542
Score = 35.8 bits (81), Expect = 0.40
Identities = 28/87 (32%), Positives = 50/87 (57%)
Frame = -1
Query: 409 IVKFCSKALAKWTLPVVANTLGIPIKSTSYIPTLNGSTAGKTSDKLKGGGYLQKLFSHKA 230
IV SKA+ +T P++A TLG+ + + S++P +NG+T+ + +++GG K+ A
Sbjct: 238 IVSSASKAVPLFTNPILA-TLGLMVFTASFLPFVNGATS--VAGEVRGGSRSFKIGVFGA 294
Query: 229 FDVDTGIRFLQYAGLAWSVVDLVPSLF 149
V +G+ + +A SV L P+ F
Sbjct: 295 L-VVSGLLITYF--IASSVSSLQPAFF 318
>gb|EAA41680.1| GLP_385_39670_37664 [Giardia lamblia ATCC 50803]
Length = 668
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 445 VGRVLLGIPTILI---VKFCSKALAKWTLPVVANTLGIPIKSTSYIPTLNGST 296
VG + +P I + C KA K+ +VAN LG+PI S P +NG T
Sbjct: 93 VGYAFMIVPDFFIESLIDSCVKAQLKFN-EIVANRLGLPISYVSQAPLINGWT 144
>ref|NP_717002.1| hypothetical protein [Shewanella oneidensis MR-1]
gi|24347106|gb|AAN54447.1|AE015582_1 hypothetical
protein [Shewanella oneidensis MR-1]
Length = 308
Score = 32.0 bits (71), Expect = 5.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 262 GYLQKLFSHKAFDVDTGIRFLQYAGLAWSVVDLV 161
GY Q++ + FDVDTG F Y GL+ + + L+
Sbjct: 24 GYQQRIDNGDVFDVDTGTYFYSYQGLSAAEIALI 57
>ref|NP_704202.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498940|emb|CAD51018.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 707
Score = 32.0 bits (71), Expect = 5.8
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = -1
Query: 166 LVPSLFSYMSL*P*DSLLFY*IFVQKKNSSPFDRIQSNELSYHNNKSFPPCEI 8
++P +YM++ D + +Y V+K N + F++ NEL Y+ +K+ PP ++
Sbjct: 617 IIPRHIAYMNIYYDDYIKYYNDLVKKYNYADFNKY-FNELVYNKDKNIPPIDL 668
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,359,787
Number of Sequences: 1393205
Number of extensions: 11160332
Number of successful extensions: 27895
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27888
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
