Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001976A_C01 KMC001976A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565096.1| expressed protein; protein id: At1g74950.1, sup... 63 3e-09
gb|AAM64554.1| unknown [Arabidopsis thaliana] 63 4e-09
gb|AAM65383.1| unknown [Arabidopsis thaliana] 58 1e-07
ref|NP_564075.1| expressed protein; protein id: At1g19180.1, sup... 58 1e-07
dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~un... 57 2e-07
>ref|NP_565096.1| expressed protein; protein id: At1g74950.1, supported by cDNA:
3024., supported by cDNA: gi_12744980, supported by
cDNA: gi_14423443 [Arabidopsis thaliana]
gi|25406399|pir||C96779 unknown protein F9E10.20
[imported] - Arabidopsis thaliana
gi|5882728|gb|AAD55281.1|AC008263_12 ESTs gb|T75898,
gb|R65457, gb|AA597517 and gb|AA597420 come from this
gene. [Arabidopsis thaliana]
gi|12323902|gb|AAG51928.1|AC013258_22 unknown protein;
53109-54448 [Arabidopsis thaliana]
gi|12744981|gb|AAK06870.1|AF344319_1 unknown protein
[Arabidopsis thaliana]
gi|14423444|gb|AAK62404.1|AF386959_1 Unknown protein
[Arabidopsis thaliana]
Length = 249
Score = 63.2 bits (152), Expect = 3e-09
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = -1
Query: 685 SADSSAPVIPGVNIIPCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDRIAAK 506
SA S + N + + E Q + + C+LPIAR+ASLHRFLEKRKDRI +K
Sbjct: 166 SAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSK 225
Query: 505 APYEVTNLMGHANKP 461
APY++ ++KP
Sbjct: 226 APYQIDGSAEASSKP 240
>gb|AAM64554.1| unknown [Arabidopsis thaliana]
Length = 249
Score = 62.8 bits (151), Expect = 4e-09
Identities = 32/75 (42%), Positives = 43/75 (56%)
Frame = -1
Query: 685 SADSSAPVIPGVNIIPCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDRIAAK 506
SA S + N + + E Q + C+LPIAR+ASLHRFLEKRKDRI +K
Sbjct: 166 SAYSQKEIASSPNPVCSPAKTAAQEPIQPKPASLACELPIARRASLHRFLEKRKDRITSK 225
Query: 505 APYEVTNLMGHANKP 461
APY++ ++KP
Sbjct: 226 APYQIDGSAEASSKP 240
>gb|AAM65383.1| unknown [Arabidopsis thaliana]
Length = 253
Score = 57.8 bits (138), Expect = 1e-07
Identities = 31/79 (39%), Positives = 46/79 (57%)
Frame = -1
Query: 697 LIRTSADSSAPVIPGVNIIPCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDR 518
L + D + + N +P + E Q S P+ +LPIAR+ASLHRFLEKRKDR
Sbjct: 161 LAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLT-ELPIARRASLHRFLEKRKDR 219
Query: 517 IAAKAPYEVTNLMGHANKP 461
+ +KAPY++ + ++ P
Sbjct: 220 VTSKAPYQLCDPAKASSNP 238
>ref|NP_564075.1| expressed protein; protein id: At1g19180.1, supported by cDNA:
38751., supported by cDNA: gi_12083249, supported by
cDNA: gi_14532539, supported by cDNA: gi_17473767,
supported by cDNA: gi_19548054, supported by cDNA:
gi_20148608 [Arabidopsis thaliana]
gi|25513501|pir||C86325 T29M8.5 protein - Arabidopsis
thaliana gi|8954056|gb|AAF82229.1|AC069143_5 Contains
similarity to an unknown protein T10D10.8 gi|6730756
from Arabidopsis thaliana BAC T10D10 gb|AC016529. ESTs
gb|T14209, gb|BE038503, gb|AA650871, gb|AA597384,
gb|H76606, gb|AI996806, gb|AI100291 come from this gene
gi|12083250|gb|AAG48784.1|AF332421_1 unknown protein
[Arabidopsis thaliana] gi|14532540|gb|AAK63998.1|
At1g19180/T29M8_5 [Arabidopsis thaliana]
gi|17473768|gb|AAL38322.1| unknown protein [Arabidopsis
thaliana] gi|19548055|gb|AAL87391.1| At1g19180/T29M8_5
[Arabidopsis thaliana] gi|20148609|gb|AAM10195.1|
unknown protein [Arabidopsis thaliana]
Length = 253
Score = 57.8 bits (138), Expect = 1e-07
Identities = 31/79 (39%), Positives = 46/79 (57%)
Frame = -1
Query: 697 LIRTSADSSAPVIPGVNIIPCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDR 518
L + D + + N +P + E Q S P+ +LPIAR+ASLHRFLEKRKDR
Sbjct: 161 LAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLT-ELPIARRASLHRFLEKRKDR 219
Query: 517 IAAKAPYEVTNLMGHANKP 461
+ +KAPY++ + ++ P
Sbjct: 220 VTSKAPYQLCDPAKASSNP 238
>dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 244
Score = 57.0 bits (136), Expect = 2e-07
Identities = 32/72 (44%), Positives = 39/72 (53%)
Frame = -1
Query: 640 PCTGTNSIPEHAQVSSRPIVCDLPIARKASLHRFLEKRKDRIAAKAPYEVTNLMGHANKP 461
P + + AQ +R D+PIARKASLHRFLEKRKDR+ AK PY+ + K
Sbjct: 162 PVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKK 221
Query: 460 AESMSTGLGLVP 425
LGL P
Sbjct: 222 EPESQPWLGLGP 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,736,151
Number of Sequences: 1393205
Number of extensions: 12227066
Number of successful extensions: 28772
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28765
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
