Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001975A_C01 KMC001975A_c01
(361 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563759.1| F-box protein family; protein id: At1g06110.1, ... 134 4e-31
gb|ZP_00003249.1| hypothetical protein [Nitrosomonas europaea] 53 1e-06
sp|Q9UK99|FBX3_HUMAN F-box only protein 3 gi|7023521|dbj|BAA9199... 52 1e-06
ref|NP_036307.2| F-box only protein 3 isoform 1; F-box protein F... 52 1e-06
gb|AAF03702.1| F-box protein FBX3 [Homo sapiens] 52 1e-06
>ref|NP_563759.1| F-box protein family; protein id: At1g06110.1, supported by cDNA:
gi_16930490, supported by cDNA: gi_20466210 [Arabidopsis
thaliana] gi|25373377|pir||D86196 hypothetical protein
[imported] - Arabidopsis thaliana
gi|8810473|gb|AAF80134.1|AC024174_16 Contains similarity
to a F-box protein FBA from Mus musculus gb|AF233226.
ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534,
gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939,
gb|T21404, gb|T44511, gb|H37689 come from this gene.
[Arabidopsis thaliana]
gi|16930491|gb|AAL31931.1|AF419599_1 At1g06110/T21E18_13
[Arabidopsis thaliana] gi|20466211|gb|AAM20423.1|
unknown protein [Arabidopsis thaliana]
gi|25084008|gb|AAN72153.1| unknown protein [Arabidopsis
thaliana]
Length = 436
Score = 134 bits (336), Expect = 4e-31
Identities = 58/91 (63%), Positives = 75/91 (81%)
Frame = -1
Query: 361 SSCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSF 182
SSCQL+WRHW+IRA++ V+ +VNGEAVIG +PLL+ G EEFVY+SC+ PT++GS++GSF
Sbjct: 346 SSCQLYWRHWVIRADNEVIDNVNGEAVIGKYPLLQAGEEEFVYESCSSFPTTAGSIDGSF 405
Query: 181 TFVPGRLANPKGDSFLATVDRFPIQLPDYIF 89
TFVPG L +PKG F V FP++LPDYIF
Sbjct: 406 TFVPGSLRDPKGSQFEVKVVEFPLELPDYIF 436
>gb|ZP_00003249.1| hypothetical protein [Nitrosomonas europaea]
Length = 127
Score = 52.8 bits (125), Expect = 1e-06
Identities = 33/87 (37%), Positives = 48/87 (54%)
Frame = -1
Query: 352 QLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFTFV 173
QL RHWII + D V +V G V+G PLL+PG E F Y S T + + +GS++GS+ V
Sbjct: 46 QLVSRHWIITSGDGVTREVRGLGVVGEQPLLKPG-ETFEYTSGTAISSIAGSMKGSYQMV 104
Query: 172 PGRLANPKGDSFLATVDRFPIQLPDYI 92
D F F +++P++I
Sbjct: 105 -------AEDGF-----HFSVEIPEFI 119
>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 gi|7023521|dbj|BAA91991.1| unnamed protein
product [Homo sapiens]
Length = 471
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/88 (35%), Positives = 44/88 (49%)
Frame = -1
Query: 358 SCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFT 179
+CQL R+W I V +V G V+G FP++ PG + Y SCT T+SG +EG +T
Sbjct: 323 ACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPG-RVYEYTSCTTFSTTSGYMEGYYT 381
Query: 178 FVPGRLANPKGDSFLATVDRFPIQLPDY 95
F K F + RF + P +
Sbjct: 382 F---HFLYFKDKIFNVAIPRFHMACPTF 406
>ref|NP_036307.2| F-box only protein 3 isoform 1; F-box protein FBX3 [Homo sapiens]
gi|28374350|gb|AAH46110.1| Similar to F-box only protein
3 [Homo sapiens]
Length = 471
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/88 (35%), Positives = 44/88 (49%)
Frame = -1
Query: 358 SCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFT 179
+CQL R+W I V +V G V+G FP++ PG + Y SCT T+SG +EG +T
Sbjct: 323 ACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPG-RVYEYTSCTTFSTTSGYMEGYYT 381
Query: 178 FVPGRLANPKGDSFLATVDRFPIQLPDY 95
F K F + RF + P +
Sbjct: 382 F---HFLYFKDKIFNVAIPRFHMACPTF 406
>gb|AAF03702.1| F-box protein FBX3 [Homo sapiens]
Length = 410
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/88 (35%), Positives = 44/88 (49%)
Frame = -1
Query: 358 SCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFT 179
+CQL R+W I V +V G V+G FP++ PG + Y SCT T+SG +EG +T
Sbjct: 318 ACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPG-RVYEYTSCTTFSTTSGYMEGYYT 376
Query: 178 FVPGRLANPKGDSFLATVDRFPIQLPDY 95
F K F + RF + P +
Sbjct: 377 F---HFLYFKDKIFNVAIPRFHMACPTF 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,137,465
Number of Sequences: 1393205
Number of extensions: 6650765
Number of successful extensions: 15290
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 15023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15274
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
