Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001963A_C02 KMC001963A_c02
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B96762 unknown protein [imported] - Arabidopsis thaliana gi... 73 3e-12
ref|NP_177495.2| unknown protein; protein id: At1g73540.1, suppo... 73 3e-12
gb|AAM66124.1| unknown [Arabidopsis thaliana] 72 5e-12
ref|NP_565273.1| expressed protein; protein id: At2g01670.1, sup... 72 5e-12
ref|NP_173266.1| unknown protein; protein id: At1g18300.1 [Arabi... 70 2e-11
>pir||B96762 unknown protein [imported] - Arabidopsis thaliana
gi|11120797|gb|AAG30977.1|AC012396_13 unknown protein
[Arabidopsis thaliana]
Length = 177
Score = 72.8 bits (177), Expect = 3e-12
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -1
Query: 588 VHEGYMFPLLVSKELDNWPEMNTRRRKWITVAEAKEICPYAWMKEALDELVNRQ 427
+H+G+MFPLLVS++ + WPE R+RKW++++EA E+C +WM+EAL+ +NR+
Sbjct: 120 IHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRK 173
>ref|NP_177495.2| unknown protein; protein id: At1g73540.1, supported by cDNA:
gi_18252868 [Arabidopsis thaliana]
gi|18252869|gb|AAL62361.1| unknown protein [Arabidopsis
thaliana] gi|25083529|gb|AAN72091.1| unknown protein
[Arabidopsis thaliana]
Length = 198
Score = 72.8 bits (177), Expect = 3e-12
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -1
Query: 588 VHEGYMFPLLVSKELDNWPEMNTRRRKWITVAEAKEICPYAWMKEALDELVNRQ 427
+H+G+MFPLLVS++ + WPE R+RKW++++EA E+C +WM+EAL+ +NR+
Sbjct: 141 IHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRK 194
>gb|AAM66124.1| unknown [Arabidopsis thaliana]
Length = 177
Score = 72.0 bits (175), Expect = 5e-12
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -1
Query: 591 TVHEGYMFPLLVSKELDNWPEMNTRRRKWITVAEAKEICPYAWMKEALDELVNRQSTKV- 415
T +EG MFP+LV+++L+ WPE + R+R W+ V EA+E C WMKEALD LV R S+ +
Sbjct: 102 TYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMN 161
Query: 414 QPKK 403
QPK+
Sbjct: 162 QPKE 165
>ref|NP_565273.1| expressed protein; protein id: At2g01670.1, supported by cDNA:
8247., supported by cDNA: gi_13272382, supported by
cDNA: gi_15293192, supported by cDNA: gi_15724325
[Arabidopsis thaliana] gi|25367543|pir||F84427
hypothetical protein At2g01670 [imported] - Arabidopsis
thaliana gi|4220481|gb|AAD12704.1| expressed protein
[Arabidopsis thaliana]
gi|13272383|gb|AAK17130.1|AF325062_1 unknown protein
[Arabidopsis thaliana]
gi|13430438|gb|AAK25841.1|AF360131_1 unknown protein
[Arabidopsis thaliana] gi|15293193|gb|AAK93707.1|
unknown protein [Arabidopsis thaliana]
gi|15724326|gb|AAL06556.1|AF412103_1 At2g01670/T8O11.16
[Arabidopsis thaliana]
Length = 182
Score = 72.0 bits (175), Expect = 5e-12
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -1
Query: 591 TVHEGYMFPLLVSKELDNWPEMNTRRRKWITVAEAKEICPYAWMKEALDELVNRQSTKV- 415
T +EG MFP+LV+++L+ WPE + R+R W+ V EA+E C WMKEALD LV R S+ +
Sbjct: 107 TYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMN 166
Query: 414 QPKK 403
QPK+
Sbjct: 167 QPKE 170
>ref|NP_173266.1| unknown protein; protein id: At1g18300.1 [Arabidopsis thaliana]
gi|6714298|gb|AAF25994.1|AC013354_13 F15H18.18
[Arabidopsis thaliana]
gi|8671772|gb|AAF78378.1|AC069551_11 T10O22.27
[Arabidopsis thaliana] gi|27765008|gb|AAO23625.1|
At1g18300 [Arabidopsis thaliana]
Length = 207
Score = 70.5 bits (171), Expect = 2e-11
Identities = 26/52 (50%), Positives = 40/52 (76%)
Frame = -1
Query: 588 VHEGYMFPLLVSKELDNWPEMNTRRRKWITVAEAKEICPYAWMKEALDELVN 433
+H+GYMF LLVS+E + WPE R+R+W+++ EA+E+C WM+EAL+ +N
Sbjct: 144 IHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFIN 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,491,080
Number of Sequences: 1393205
Number of extensions: 9580494
Number of successful extensions: 19855
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19853
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
