Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001961A_C01 KMC001961A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189865.1| nucleic acid binding protein-like; protein id: ... 138 3e-32
ref|NP_197551.1| zinc finger protein - like; protein id: At5g205... 135 3e-31
ref|NP_197993.1| nucleic acid binding protein - like; protein id... 129 2e-29
pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana... 129 2e-29
gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsi... 128 3e-29
>ref|NP_189865.1| nucleic acid binding protein-like; protein id: At3g42790.1,
supported by cDNA: gi_17065549 [Arabidopsis thaliana]
gi|11281497|pir||T47337 nucleic acid binding
protein-like - Arabidopsis thaliana
gi|7543887|emb|CAB87196.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|17065550|gb|AAL32929.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|21386979|gb|AAM47893.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 250
Score = 138 bits (348), Expect = 3e-32
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -2
Query: 505 DDDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYQC 326
D++ DE+D+D+HGETLCGACGD G DEFWICCD+CEKWFHGKCVKITPARAEHIKQY+C
Sbjct: 181 DEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKC 240
Query: 325 PSCTNQRVR 299
PSC+N+R R
Sbjct: 241 PSCSNKRAR 249
>ref|NP_197551.1| zinc finger protein - like; protein id: At5g20510.1 [Arabidopsis
thaliana]
Length = 232
Score = 135 bits (340), Expect = 3e-31
Identities = 51/68 (75%), Positives = 65/68 (95%)
Frame = -2
Query: 502 DDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYQCP 323
+++++ED+DEHGETLCGACGD+Y +DEFWICCD+CEKWFHG+CVKITPARAEHIK Y+CP
Sbjct: 164 EEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCP 223
Query: 322 SCTNQRVR 299
+C+N+R R
Sbjct: 224 TCSNKRAR 231
>ref|NP_197993.1| nucleic acid binding protein - like; protein id: At5g26210.1,
supported by cDNA: 32443. [Arabidopsis thaliana]
gi|21592780|gb|AAM64729.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 255
Score = 129 bits (324), Expect = 2e-29
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = -2
Query: 493 DEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYQCPSCT 314
+EED+DE GET CGACG+ Y DEFWICCD+CE WFHGKCVKITPARAEHIKQY+CPSC+
Sbjct: 190 EEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 249
Query: 313 NQRVRT 296
N+R R+
Sbjct: 250 NKRARS 255
>pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana
gi|3319341|gb|AAC26230.1| similar to Medicago sativa
nucleic acid binding protein Alfin-1 (GB:L07291)
[Arabidopsis thaliana]
Length = 251
Score = 129 bits (324), Expect = 2e-29
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = -2
Query: 493 DEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYQCPSCT 314
+EED+DE GET CGACG+ Y DEFWICCD+CE WFHGKCVKITPARAEHIKQY+CPSC+
Sbjct: 186 EEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 245
Query: 313 NQRVRT 296
N+R R+
Sbjct: 246 NKRARS 251
>gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]
Length = 256
Score = 128 bits (322), Expect = 3e-29
Identities = 51/69 (73%), Positives = 61/69 (87%)
Frame = -2
Query: 505 DDDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYQC 326
D+ +DE +DDE G +CGACGD+YGTDEFWICCD CEKWFHGKCVKITPA+AEHIK Y+C
Sbjct: 188 DESEDESEDDEQG-AVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKC 246
Query: 325 PSCTNQRVR 299
P+C+N+R R
Sbjct: 247 PTCSNKRAR 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,841,390
Number of Sequences: 1393205
Number of extensions: 8744303
Number of successful extensions: 91675
Number of sequences better than 10.0: 786
Number of HSP's better than 10.0 without gapping: 38761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70995
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
