Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001954A_C01 KMC001954A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG45117.1|AF310887_2 unknown [Dictyostelium discoideum] 35 1.0
emb|CAA63219.1| pva1 [Plasmodium vivax] 33 3.8
dbj|BAC03496.1| unnamed protein product [Homo sapiens] 33 5.0
gb|AAM69155.1| maturase K [Hyalochlamys globifera] 32 6.5
ref|NP_213019.1| cytochrome b [Aquifex aeolicus] gi|7430516|pir|... 32 6.5
>gb|AAG45117.1|AF310887_2 unknown [Dictyostelium discoideum]
Length = 559
Score = 35.0 bits (79), Expect = 1.0
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -3
Query: 691 DDDSCSMGSSSKG--KNNNEGIALEVRVQLNKLRRFKWKDGNGS--GTPGKK 548
DD S +GS K KN+ EG ++ L KL+ K KDGNG+ T G+K
Sbjct: 445 DDQSSQVGSEEKSPSKNSKEGSPTPFKMFLKKLKINKKKDGNGNTVSTAGEK 496
>emb|CAA63219.1| pva1 [Plasmodium vivax]
Length = 200
Score = 33.1 bits (74), Expect = 3.8
Identities = 23/50 (46%), Positives = 25/50 (50%)
Frame = +3
Query: 522 LGPFFTPSNFFPGVPLPLPSFHLNLRSLLS*TRTSNAIPSLLFFPLLLLP 671
L P S P PLP PS L+L S S +PSL FFPLL LP
Sbjct: 55 LSPLLALSFPSPSPPLPFPSVSLSLFCFPS---FSFFLPSLPFFPLLSLP 101
>dbj|BAC03496.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 32.7 bits (73), Expect = 5.0
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 616 HEPPTRSLRCCSSPCC---CFPCCSCH 687
H P SLRC SPCC C PCCS H
Sbjct: 93 HCSPCCSLRC--SPCCSLRCSPCCSLH 117
Score = 32.0 bits (71), Expect = 8.5
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = +1
Query: 625 PTRSLRCC--SSPCC---CFPCCSCH 687
P RSL C SPCC C PCCS H
Sbjct: 68 PMRSLHCSLHCSPCCSLRCSPCCSLH 93
>gb|AAM69155.1| maturase K [Hyalochlamys globifera]
Length = 395
Score = 32.3 bits (72), Expect = 6.5
Identities = 26/110 (23%), Positives = 43/110 (38%), Gaps = 17/110 (15%)
Frame = -2
Query: 431 FIRFYMYTFWLFKE----------------SSRLVVVHVWKVFYT*FW-THNQFWDETSL 303
F R + TFWLFK+ ++++ WK ++ FW ++ W
Sbjct: 259 FARAFQATFWLFKDPFMHYVRYQGKSIIASKGTFLLMNKWKYYFVNFWKSYFYLWSRPGS 318
Query: 302 LSFRIDSEQNRSLS*HARGRFLGVHSNMRSLDIDCSG*SLIN*FRLVNII 153
+ I+ N S+ FLG S++R L N F + N+I
Sbjct: 319 IYIYINKLYNHSID------FLGYRSSVRLEPSMIRSQMLENAFLIDNVI 362
>ref|NP_213019.1| cytochrome b [Aquifex aeolicus] gi|7430516|pir||H70303
ubiquinol-cytochrome-c reductase (EC 1.10.2.2)
cytochrome b - Aquifex aeolicus
gi|2982800|gb|AAC06424.1| cytochrome b [Aquifex aeolicus
VF5]
Length = 409
Score = 32.3 bits (72), Expect = 6.5
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +3
Query: 501 FFSFFHKLGPFFTPSNFFPGVPLPLPSFHLNLRSLLS*TRTSNAIPS---------LLFF 653
FF FFH + F P NF P PL P+ LL +IPS L
Sbjct: 266 FFVFFH-ISHFLPPENFEPANPLKTPAHIAPEWYLLGYYEVFRSIPSKFWGFVAFNALLL 324
Query: 654 PLLLLPMLQLS 686
LLLLP L S
Sbjct: 325 LLLLLPFLDFS 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,459,553
Number of Sequences: 1393205
Number of extensions: 12238214
Number of successful extensions: 35278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34746
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
