Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001941A_C01 KMC001941A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61043.1| unknown [Arabidopsis thaliana] 111 7e-24
ref|NP_565484.1| expressed protein; protein id: At2g20760.1, sup... 110 2e-23
ref|NP_565921.1| expressed protein; protein id: At2g40060.1, sup... 96 4e-19
gb|AAM65809.1| unknown [Arabidopsis thaliana] 96 4e-19
pir||T51160 hypothetical protein [imported] - Arabidopsis thalia... 92 6e-18
>gb|AAM61043.1| unknown [Arabidopsis thaliana]
Length = 338
Score = 111 bits (278), Expect = 7e-24
Identities = 57/81 (70%), Positives = 62/81 (76%), Gaps = 3/81 (3%)
Frame = -2
Query: 638 LIPHEVPAIQK-RGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPPHMKPKP 462
LIP EVP I+K RGKKD +KKPS+ VIQGPKPGKPTDL RMRQI LKLK NPPPHM P P
Sbjct: 191 LIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPP 250
Query: 461 PPSSETK--KDAKTGPPDVAG 405
PP+ + K KDAK G AG
Sbjct: 251 PPAKDAKDGKDAKDGKDAKAG 271
>ref|NP_565484.1| expressed protein; protein id: At2g20760.1, supported by cDNA:
108956., supported by cDNA: gi_15982816, supported by
cDNA: gi_16323100 [Arabidopsis thaliana]
gi|25411992|pir||A84593 hypothetical protein At2g20760
[imported] - Arabidopsis thaliana
gi|4454472|gb|AAD20919.1| expressed protein [Arabidopsis
thaliana] gi|15982817|gb|AAL09756.1| At2g20760/F5H14.27
[Arabidopsis thaliana] gi|16323101|gb|AAL15285.1|
At2g20760/F5H14.27 [Arabidopsis thaliana]
Length = 338
Score = 110 bits (274), Expect = 2e-23
Identities = 55/75 (73%), Positives = 60/75 (79%), Gaps = 3/75 (4%)
Frame = -2
Query: 638 LIPHEVPAIQK-RGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPPHMKPKP 462
LIP EVP I+K RGKKD +KKPS+ VIQGPKPGKPTDL RMRQI LKLK NPPPHM P P
Sbjct: 191 LIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPP 250
Query: 461 PPSSETK--KDAKTG 423
PP+ + K KDAK G
Sbjct: 251 PPAKDAKDGKDAKDG 265
>ref|NP_565921.1| expressed protein; protein id: At2g40060.1, supported by cDNA:
5046., supported by cDNA: gi_20260191 [Arabidopsis
thaliana] gi|25366606|pir||G84824 hypothetical protein
At2g40060 [imported] - Arabidopsis thaliana
gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis
thaliana] gi|20260192|gb|AAM12994.1| unknown protein
[Arabidopsis thaliana] gi|21387051|gb|AAM47929.1|
unknown protein [Arabidopsis thaliana]
Length = 258
Score = 95.9 bits (237), Expect = 4e-19
Identities = 53/94 (56%), Positives = 64/94 (67%), Gaps = 4/94 (4%)
Frame = -2
Query: 638 LIPHEVPAIQKR-GKKDKE--KKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPPHMK- 471
L+P EVP I+KR GKK+++ KKP++ VIQGPKPGKPTDL+RMRQIL+KLKHNPP H+K
Sbjct: 171 LVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKL 230
Query: 470 PKPPPSSETKKDAKTGPPDVAGSSTTPPKAVAVA 369
PPS E K P T P +AV A
Sbjct: 231 TSQPPSEEAAAPPKNVP------ETKPTEAVTAA 258
>gb|AAM65809.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 95.9 bits (237), Expect = 4e-19
Identities = 53/94 (56%), Positives = 64/94 (67%), Gaps = 4/94 (4%)
Frame = -2
Query: 638 LIPHEVPAIQKR-GKKDKE--KKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPPHMK- 471
L+P EVP I+KR GKK+++ KKP++ VIQGPKPGKPTDL+RMRQIL+KLKHNPP H+K
Sbjct: 171 LVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKL 230
Query: 470 PKPPPSSETKKDAKTGPPDVAGSSTTPPKAVAVA 369
PPS E K P T P +AV A
Sbjct: 231 TSQPPSEEAAAPPKNVP------ETKPTEAVTAA 258
>pir||T51160 hypothetical protein [imported] - Arabidopsis thaliana
gi|3068716|gb|AAC14416.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 92.0 bits (227), Expect = 6e-18
Identities = 45/63 (71%), Positives = 50/63 (78%)
Frame = -2
Query: 638 LIPHEVPAIQKRGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQILLKLKHNPPPHMKPKPP 459
LIP EVP I+ RG +K+K +I VIQGPKPGKPTDLSRMRQ+L KLKHNPP HMKPK P
Sbjct: 155 LIPREVPVIENRG--NKKKTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLP 212
Query: 458 PSS 450
S
Sbjct: 213 SPS 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,786,177
Number of Sequences: 1393205
Number of extensions: 12886829
Number of successful extensions: 74368
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 50585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67329
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
