Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001936A_C01 KMC001936A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566385.1| expressed protein; protein id: At3g10970.1, sup... 172 2e-42
gb|AAM64820.1| unknown [Arabidopsis thaliana] 172 2e-42
gb|AAK63981.1| AT3g10970/F9F8_21 [Arabidopsis thaliana] gi|22137... 172 2e-42
gb|AAF01524.1|AC009991_20 unknown protein [Arabidopsis thaliana] 172 2e-42
ref|NP_192894.1| putative protein; protein id: At4g11570.1, supp... 59 3e-08
>ref|NP_566385.1| expressed protein; protein id: At3g10970.1, supported by cDNA:
33407., supported by cDNA: gi_14532505 [Arabidopsis
thaliana]
Length = 365
Score = 172 bits (436), Expect = 2e-42
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = -2
Query: 479 RFLSAAVKLDRKPSKCVVFEDDPRGVAAAHNCTMMAIALIGAHPAYDLRQADLAVANFSE 300
RFLSAAVKLDRKPSKCVVFEDDPRG+ AAHNCTMMA+ LIGAH AYDL QADLAV NF E
Sbjct: 266 RFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYE 325
Query: 299 LSVINLRRLFANNGSTFMDLQKQVIEKTPSKRKLSIDTIF 180
LSVINLRRLFAN GSTFMD +KQ+IEK+P KRKL+IDTIF
Sbjct: 326 LSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF 365
>gb|AAM64820.1| unknown [Arabidopsis thaliana]
Length = 365
Score = 172 bits (436), Expect = 2e-42
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = -2
Query: 479 RFLSAAVKLDRKPSKCVVFEDDPRGVAAAHNCTMMAIALIGAHPAYDLRQADLAVANFSE 300
RFLSAAVKLDRKPSKCVVFEDDPRG+ AAHNCTMMA+ LIGAH AYDL QADLAV NF E
Sbjct: 266 RFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYE 325
Query: 299 LSVINLRRLFANNGSTFMDLQKQVIEKTPSKRKLSIDTIF 180
LSVINLRRLFAN GSTFMD +KQ+IEK+P KRKL+IDTIF
Sbjct: 326 LSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF 365
>gb|AAK63981.1| AT3g10970/F9F8_21 [Arabidopsis thaliana] gi|22137294|gb|AAM91492.1|
AT3g10970/F9F8_21 [Arabidopsis thaliana]
Length = 365
Score = 172 bits (436), Expect = 2e-42
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = -2
Query: 479 RFLSAAVKLDRKPSKCVVFEDDPRGVAAAHNCTMMAIALIGAHPAYDLRQADLAVANFSE 300
RFLSAAVKLDRKPSKCVVFEDDPRG+ AAHNCTMMA+ LIGAH AYDL QADLAV NF E
Sbjct: 266 RFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYE 325
Query: 299 LSVINLRRLFANNGSTFMDLQKQVIEKTPSKRKLSIDTIF 180
LSVINLRRLFAN GSTFMD +KQ+IEK+P KRKL+IDTIF
Sbjct: 326 LSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF 365
>gb|AAF01524.1|AC009991_20 unknown protein [Arabidopsis thaliana]
Length = 201
Score = 172 bits (436), Expect = 2e-42
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = -2
Query: 479 RFLSAAVKLDRKPSKCVVFEDDPRGVAAAHNCTMMAIALIGAHPAYDLRQADLAVANFSE 300
RFLSAAVKLDRKPSKCVVFEDDPRG+ AAHNCTMMA+ LIGAH AYDL QADLAV NF E
Sbjct: 102 RFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYE 161
Query: 299 LSVINLRRLFANNGSTFMDLQKQVIEKTPSKRKLSIDTIF 180
LSVINLRRLFAN GSTFMD +KQ+IEK+P KRKL+IDTIF
Sbjct: 162 LSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF 201
>ref|NP_192894.1| putative protein; protein id: At4g11570.1, supported by cDNA:
gi_16648788, supported by cDNA: gi_20466124 [Arabidopsis
thaliana] gi|7486116|pir||T10577 hypothetical protein
F25E4.190 - Arabidopsis thaliana
gi|7267857|emb|CAB78200.1| putative protein [Arabidopsis
thaliana] gi|7321054|emb|CAB82162.1| putative protein
[Arabidopsis thaliana] gi|16648789|gb|AAL25585.1|
AT4g11570/F25E4_190 [Arabidopsis thaliana]
gi|20466125|gb|AAM19984.1| AT4g11570/F25E4_190
[Arabidopsis thaliana] gi|24030331|gb|AAN41332.1|
unknown protein [Arabidopsis thaliana]
Length = 373
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = -2
Query: 476 FLSAAVKLDRKPSKCVVFEDDPRGVAAAHNCTMMAIALIGAHPAYDLRQADLAVANFSEL 297
F+ AA LD P +C+VF + + + AAH+ M +A+ HP Y+L A+L V EL
Sbjct: 274 FIYAAQLLDFIPERCIVFGNSNQTIEAAHDGRMKCVAVASKHPIYELGAAELVVRRLDEL 333
Query: 296 SVINLRRLFANNGSTF---MDLQKQVIEKTPS 210
S+I+L++L + + F ++++K+ + PS
Sbjct: 334 SIIDLKKLADTDLTEFEPELEMEKEDERELPS 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,092,207
Number of Sequences: 1393205
Number of extensions: 7220875
Number of successful extensions: 15345
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 14996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15343
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
