Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001931A_C03 KMC001931A_c03
(783 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P48631|FD62_SOYBN Omega-6 fatty acid desaturase, endoplasmic ... 228 8e-59
gb|AAN87573.1| delta 12 oleic acid desaturase FAD2 [Vernicia for... 227 2e-58
gb|AAF80560.1|AF192486_1 omega-6 fatty acid desaturase [Sesamum ... 224 1e-57
sp|P48630|FD61_SOYBN Omega-6 fatty acid desaturase, endoplasmic ... 222 5e-57
emb|CAD30827.1| fatty acid desaturase 2 [Brassica rapa] 222 5e-57
>sp|P48631|FD62_SOYBN Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2
gi|7433297|pir||T07688 omega-6 desaturase FAD2-2,
microsomal - soybean gi|904154|gb|AAB00860.1| microsomal
omega-6 desaturase
Length = 383
Score = 228 bits (581), Expect = 8e-59
Identities = 102/117 (87%), Positives = 109/117 (92%)
Frame = -1
Query: 783 VVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL 604
VVNGFLVLIT+LQHTHPALPHY SSEWDW RGALATVDRDYGILNKVFHNITDTH+AHHL
Sbjct: 261 VVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 320
Query: 603 FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDPGTETKALY 433
FSTMPHYHAMEATKAIKPILGEYYRFD TPF KA+WREA EC+YVEPD TE+K ++
Sbjct: 321 FSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVF 377
>gb|AAN87573.1| delta 12 oleic acid desaturase FAD2 [Vernicia fordii]
Length = 383
Score = 227 bits (578), Expect = 2e-58
Identities = 99/117 (84%), Positives = 109/117 (92%)
Frame = -1
Query: 783 VVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL 604
+VN FLV+ITYLQHTHP++PHYDSSEWDW RGALATVDRDYGILNKVFHNITDTH+AHHL
Sbjct: 261 IVNAFLVMITYLQHTHPSIPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 320
Query: 603 FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDPGTETKALY 433
FSTMPHYHAMEATKAIKPILGEYY+FD TPFYKA+WREA EC+YVE D G E+K +Y
Sbjct: 321 FSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECIYVEADDGDESKGVY 377
>gb|AAF80560.1|AF192486_1 omega-6 fatty acid desaturase [Sesamum indicum]
Length = 383
Score = 224 bits (570), Expect = 1e-57
Identities = 97/117 (82%), Positives = 108/117 (91%)
Frame = -1
Query: 783 VVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL 604
+VNGFLVLIT+LQHTHP+LPHYDSSEWDW RGALATVDRDYG+LNKVFHNITDTH+ HHL
Sbjct: 261 IVNGFLVLITFLQHTHPSLPHYDSSEWDWLRGALATVDRDYGVLNKVFHNITDTHVTHHL 320
Query: 603 FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDPGTETKALY 433
FSTMPHYHAMEATKAIKPILG+YY+FD TPFYKA+WREA EC+YVEPD T K ++
Sbjct: 321 FSTMPHYHAMEATKAIKPILGQYYQFDGTPFYKAMWREAKECLYVEPDESTPDKGVF 377
>sp|P48630|FD61_SOYBN Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1
gi|7433296|pir||T07687 omega-6 desaturase FAD2-1,
microsomal - soybean gi|904152|gb|AAB00859.1| microsomal
omega-6 desaturase
Length = 387
Score = 222 bits (565), Expect = 5e-57
Identities = 98/117 (83%), Positives = 107/117 (90%)
Frame = -1
Query: 783 VVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL 604
+VNGFLV ITYLQHTH ALPHYDSSEWDW +GALAT+DRDYGILNKVFH+ITDTH+AHHL
Sbjct: 265 IVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHL 324
Query: 603 FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDPGTETKALY 433
FSTMPHYHAMEAT AIKPILGEYY+FD TPFYKA+WREA EC+YVEPD GT K +Y
Sbjct: 325 FSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVY 381
>emb|CAD30827.1| fatty acid desaturase 2 [Brassica rapa]
Length = 384
Score = 222 bits (565), Expect = 5e-57
Identities = 99/117 (84%), Positives = 107/117 (90%)
Frame = -1
Query: 783 VVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHL 604
+VNGFLVLITYLQHTHP+LPHYDSSEWDW RGALATVDRDYGILNKVFHNITDTH+AHHL
Sbjct: 262 IVNGFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 321
Query: 603 FSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDPGTETKALY 433
FSTMPHYHAMEATKAIKPILGEYY+FD TP KA+WREA EC+YVEPD E K ++
Sbjct: 322 FSTMPHYHAMEATKAIKPILGEYYQFDGTPVVKAMWREAKECIYVEPDRQGEKKGVF 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 705,023,397
Number of Sequences: 1393205
Number of extensions: 15737541
Number of successful extensions: 39105
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 37312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38989
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
