Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001922A_C01 KMC001922A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43483.1| putative shikimate kinase precursor [Arabidopsis... 184 2e-45
dbj|BAC42436.1| putative shikimate kinase [Arabidopsis thaliana]... 176 2e-43
ref|NP_195664.1| shikimate kinase - like protein; protein id: At... 176 2e-43
ref|NP_179785.1| putative shikimate kinase precursor; protein id... 173 2e-42
sp|Q00497|AROK_LYCES Shikimate kinase, chloroplast precursor gi|... 169 4e-41
>dbj|BAC43483.1| putative shikimate kinase precursor [Arabidopsis thaliana]
Length = 303
Score = 184 bits (466), Expect = 2e-45
Identities = 91/131 (69%), Positives = 112/131 (85%)
Frame = -1
Query: 759 EPLHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLL 580
+ L KLS ++ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLL
Sbjct: 164 DALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLL 223
Query: 579 HYEAGDAYTRALMRLSALFEERGEAYANASARVSLEKIATKRGPRDVLDLSPTAIAIEAL 400
H E+GDAY+ A RLSA+++ERGEAY NA+ARVSLE IA KRG ++V DL+PT IAIEA
Sbjct: 224 HDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAF 283
Query: 399 EQIDAFLKGED 367
EQ+ +FL+ E+
Sbjct: 284 EQVLSFLEKEE 294
>dbj|BAC42436.1| putative shikimate kinase [Arabidopsis thaliana]
gi|28950863|gb|AAO63355.1| At4g39540 [Arabidopsis
thaliana]
Length = 300
Score = 176 bits (447), Expect = 2e-43
Identities = 92/134 (68%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = -1
Query: 759 EPLHKLSMM-HRHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPL 583
E L KLS+M H+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT SRPL
Sbjct: 160 EALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPL 219
Query: 582 LH-YEAGDAYTRALMRLSALFEERGEAYANASARVSLEKIATKRGPRDVLDLSPTAIAIE 406
LH E+GD YT AL RLS +++ RGEAY ASARVSLE I K G R V DL+P IAIE
Sbjct: 220 LHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 279
Query: 405 ALEQIDAFLKGEDG 364
A EQ+ ++L+ EDG
Sbjct: 280 AFEQVQSYLEKEDG 293
>ref|NP_195664.1| shikimate kinase - like protein; protein id: At4g39540.1
[Arabidopsis thaliana] gi|7434489|pir||T09370 shikimate
kinase homolog F23K16.170 - Arabidopsis thaliana
gi|5042170|emb|CAB44689.1| shikimate kinase-like protein
[Arabidopsis thaliana] gi|7270938|emb|CAB80617.1|
shikimate kinase-like protein [Arabidopsis thaliana]
Length = 305
Score = 176 bits (447), Expect = 2e-43
Identities = 92/134 (68%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = -1
Query: 759 EPLHKLSMM-HRHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPL 583
E L KLS+M H+ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT SRPL
Sbjct: 165 EALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPL 224
Query: 582 LH-YEAGDAYTRALMRLSALFEERGEAYANASARVSLEKIATKRGPRDVLDLSPTAIAIE 406
LH E+GD YT AL RLS +++ RGEAY ASARVSLE I K G R V DL+P IAIE
Sbjct: 225 LHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 284
Query: 405 ALEQIDAFLKGEDG 364
A EQ+ ++L+ EDG
Sbjct: 285 AFEQVQSYLEKEDG 298
>ref|NP_179785.1| putative shikimate kinase precursor; protein id: At2g21940.1
[Arabidopsis thaliana] gi|20137565|sp|Q9SJ05|AROK_ARATH
Probable shikimate kinase, chloroplast precursor
gi|25288007|pir||A84607 probable shikimate kinase
precursor [imported] - Arabidopsis thaliana
gi|4417286|gb|AAD20411.1| putative shikimate kinase
precursor [Arabidopsis thaliana]
Length = 292
Score = 173 bits (439), Expect = 2e-42
Identities = 86/127 (67%), Positives = 105/127 (81%)
Frame = -1
Query: 759 EPLHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLL 580
+ L KLS ++ +VSTGGGAV+RPINWKYMHKGIS+WLDVP+EALA RIAAVGT+SRPLL
Sbjct: 164 DALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLL 223
Query: 579 HYEAGDAYTRALMRLSALFEERGEAYANASARVSLEKIATKRGPRDVLDLSPTAIAIEAL 400
H E+GDAY+ A RLSA+++ERGEAY NA+ARVSLE IA KRG ++V DL+PT IAIE
Sbjct: 224 HDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEVS 283
Query: 399 EQIDAFL 379
+ + L
Sbjct: 284 QVLSQLL 290
>sp|Q00497|AROK_LYCES Shikimate kinase, chloroplast precursor gi|100253|pir||S21584
shikimate kinase (EC 2.7.1.71) precursor - tomato
gi|19349|emb|CAA45121.1| shikimate kinase precursor
[Lycopersicon esculentum]
Length = 300
Score = 169 bits (428), Expect = 4e-41
Identities = 86/128 (67%), Positives = 100/128 (77%)
Frame = -1
Query: 759 EPLHKLSMMHRHIVSTGGGAVMRPINWKYMHKGISVWLDVPVEALAQRIAAVGTNSRPLL 580
E LHKLS+MHR +VSTGGGAV+RPINW++MHKGISVWLDVP+EALA+RI GT SRPLL
Sbjct: 166 EVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLL 225
Query: 579 HYEAGDAYTRALMRLSALFEERGEAYANASARVSLEKIATKRGPRDVLDLSPTAIAIEAL 400
H E+GD Y L RL+ L E RGE YANASARVSLE IA KR +DV ++P I +E L
Sbjct: 226 HEESGDVYDTTLKRLTTLMETRGENYANASARVSLENIALKR-EKDVCHITPAEITLEVL 284
Query: 399 EQIDAFLK 376
QI+ FLK
Sbjct: 285 IQIENFLK 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,628,357
Number of Sequences: 1393205
Number of extensions: 14717236
Number of successful extensions: 43996
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 42106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43948
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
