Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001913A_C01 KMC001913A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum] 97 1e-19
emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana] 91 6e-18
ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g1677... 91 8e-18
gb|AAL67489.1|AF459404_1 AP-2 domain containing protein [Narciss... 87 1e-16
gb|AAM65746.1| AP2 domain containing protein, putative [Arabidop... 82 2e-15
>dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum]
Length = 264
Score = 96.7 bits (239), Expect = 1e-19
Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Frame = +2
Query: 83 MCGGAIISDFI-AVKRGRNLAPQEIWSELDPFSDFAAFDAASAGAAVSTTPTSKSSSPPL 259
MCGGAIISD+ A R L+ +++W+ELDP SD+ + +S+ ++ P S + SP
Sbjct: 1 MCGGAIISDYEPAGNFYRKLSARDLWAELDPISDYWS---SSSSSSTVENPYS-AQSPVT 56
Query: 260 NFDDVIQVPDQKVAGCDKKGEKKKSVVG--SGGARKKNARKNVYRGIRQRPWGKCAAEIR 433
+ D + D + KKG K V S G R+ RKN YRGIRQRPWGK AAEIR
Sbjct: 57 HSVDKPKKSDSGKSNQLKKGNKTVKVEKEKSTGPRQ---RKNKYRGIRQRPWGKWAAEIR 113
Query: 434 DPQKGVRVWL 463
DPQKGVRVWL
Sbjct: 114 DPQKGVRVWL 123
>emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana]
Length = 246
Score = 90.9 bits (224), Expect = 6e-18
Identities = 58/130 (44%), Positives = 72/130 (54%), Gaps = 3/130 (2%)
Frame = +2
Query: 83 MCGGAIISDF---IAVKRGRNLAPQEIWSELDPFSDFAAFDAASAGAAVSTTPTSKSSSP 253
MCGGAIISD+ + +GR L +E+WSELD A++A TSK
Sbjct: 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELD---------ASAADDFWGFYSTSKLH-- 49
Query: 254 PLNFDDVIQVPDQKVAGCDKKGEKKKSVVGSGGARKKNARKNVYRGIRQRPWGKCAAEIR 433
P +V +++ KK+ G RK RKNVYRGIR+RPWGK AAEIR
Sbjct: 50 ----------PTNQVNVKEEEAVKKEQATEPGKRRK---RKNVYRGIRKRPWGKWAAEIR 96
Query: 434 DPQKGVRVWL 463
DP+KGVRVWL
Sbjct: 97 DPRKGVRVWL 106
>ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g16770.1, supported by
cDNA: 35981., supported by cDNA: gi_14334853, supported
by cDNA: gi_16649094, supported by cDNA: gi_2281630
[Arabidopsis thaliana] gi|27735162|sp|P42736|AP23_ARATH
AP2 domain transcription factor RAP2.3 (Related to AP2
protein 3) (Cadmium-induced protein AS30)
gi|2281631|gb|AAC49769.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana]
gi|11994632|dbj|BAB02769.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|14334854|gb|AAK59605.1| putative AP2 domain
containing protein RAP2.3 [Arabidopsis thaliana]
gi|16649095|gb|AAL24399.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|21593082|gb|AAM65031.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana] gi|23296611|gb|AAN13131.1|
putative AP2 domain containing protein RAP2.3
[Arabidopsis thaliana]
Length = 248
Score = 90.5 bits (223), Expect = 8e-18
Identities = 59/132 (44%), Positives = 74/132 (55%), Gaps = 5/132 (3%)
Frame = +2
Query: 83 MCGGAIISDF---IAVKRGRNLAPQEIWSELDPFS--DFAAFDAASAGAAVSTTPTSKSS 247
MCGGAIISD+ + +GR L +E+WSELD + DF F + S PT++
Sbjct: 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTS-----KLHPTNQ-- 53
Query: 248 SPPLNFDDVIQVPDQKVAGCDKKGEKKKSVVGSGGARKKNARKNVYRGIRQRPWGKCAAE 427
+ V ++ V KK G R+K RKNVYRGIR+RPWGK AAE
Sbjct: 54 ---------VNVKEEAV---------KKEQATEPGKRRK--RKNVYRGIRKRPWGKWAAE 93
Query: 428 IRDPQKGVRVWL 463
IRDP+KGVRVWL
Sbjct: 94 IRDPRKGVRVWL 105
>gb|AAL67489.1|AF459404_1 AP-2 domain containing protein [Narcissus pseudonarcissus]
Length = 153
Score = 86.7 bits (213), Expect = 1e-16
Identities = 56/134 (41%), Positives = 68/134 (49%), Gaps = 7/134 (5%)
Frame = +2
Query: 83 MCGGAIISDFIAVKRGRNLAPQEIWSELDPFSD----FAAFDAASAGAAVSTTPTSKSSS 250
MCGGAIISDFI R R L +W L+ D F D A + + S
Sbjct: 1 MCGGAIISDFIPPSRSRKLTADYLWPNLNKGKDKKKSFGFEDDFEADFNEFEDESEEGES 60
Query: 251 PPLNFDDVIQVPDQKVAGCDKKGEKKKSVVGSGGARKKNA---RKNVYRGIRQRPWGKCA 421
+ DV AG ++G + GA ++++ RKN YRGIRQRPWGK A
Sbjct: 61 EAV---DVKPFKFGAKAGFSREGSTYLKPIELNGAAERSSKRKRKNQYRGIRQRPWGKWA 117
Query: 422 AEIRDPQKGVRVWL 463
AEIRDP KGVRVWL
Sbjct: 118 AEIRDPNKGVRVWL 131
>gb|AAM65746.1| AP2 domain containing protein, putative [Arabidopsis thaliana]
Length = 358
Score = 82.4 bits (202), Expect = 2e-15
Identities = 58/151 (38%), Positives = 71/151 (46%), Gaps = 24/151 (15%)
Frame = +2
Query: 83 MCGGAIISDFIAVKRGRNLAPQEIWSELDPF-----------SDFAAFDAA-SAGAAVST 226
MCGGAIISDFI R R + + IW +L S+F FDA A
Sbjct: 1 MCGGAIISDFIPPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFK 60
Query: 227 TPTSKSSSPPLNFDDVI---------QVPDQKVAGCDKKGEKKKSVVGSGGARKKNA--- 370
+S + DV P V+ + K V G G +K+A
Sbjct: 61 DDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGEAEKSANRK 120
Query: 371 RKNVYRGIRQRPWGKCAAEIRDPQKGVRVWL 463
RKN YRGIRQRPWGK AAEIRDP++G R+WL
Sbjct: 121 RKNQYRGIRQRPWGKWAAEIRDPREGARIWL 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,191,681
Number of Sequences: 1393205
Number of extensions: 10469047
Number of successful extensions: 55019
Number of sequences better than 10.0: 566
Number of HSP's better than 10.0 without gapping: 49117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54396
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
