Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001911A_C01 KMC001911A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66002.1| unknown [Arabidopsis thaliana] 161 6e-39
ref|NP_564847.1| expressed protein; protein id: At1g65270.1, sup... 161 6e-39
gb|AAH42237.1| Unknown (protein for IMAGE:5570892) [Xenopus laevis] 39 0.046
gb|AAH06065.1| Unknown (protein for IMAGE:3591916) [Mus musculus] 38 0.13
ref|NP_778233.1| hypothetical protein LOC284361 [Homo sapiens] g... 38 0.13
>gb|AAM66002.1| unknown [Arabidopsis thaliana]
Length = 292
Score = 161 bits (408), Expect = 6e-39
Identities = 77/104 (74%), Positives = 84/104 (80%)
Frame = -2
Query: 644 YGAHGACPYPRXLKLPAKWSFKSHTVLKNSEQAPRTPIFAEEVLGGEGIDGETIKPIERS 465
YG+ GAC YPR LKLPAKWSF SHT+LK+SEQAPRTPIF EE+LG E ++GE P ERS
Sbjct: 186 YGSPGACQYPRQLKLPAKWSFNSHTILKSSEQAPRTPIFTEEILGSENVEGEVEPPPERS 245
Query: 464 FWAKYWMYLIPLGLIVMNAVTQAMNMPEEQAGAQGGAGPAPQPA 333
FWAKYWMYLIPLGL+VMNAVTQA NM EE AG Q G G QPA
Sbjct: 246 FWAKYWMYLIPLGLVVMNAVTQASNMAEEPAGGQAG-GAQVQPA 288
>ref|NP_564847.1| expressed protein; protein id: At1g65270.1, supported by cDNA:
6906. [Arabidopsis thaliana] gi|7459138|pir||T02349
hypothetical protein T8F5.4 - Arabidopsis thaliana
gi|3335335|gb|AAC27137.1|AAC27137 ESTs gb|F14113 and
gb|T42122 come from this region. [Arabidopsis thaliana]
gi|27311649|gb|AAO00790.1| expressed protein
[Arabidopsis thaliana]
Length = 292
Score = 161 bits (408), Expect = 6e-39
Identities = 77/104 (74%), Positives = 84/104 (80%)
Frame = -2
Query: 644 YGAHGACPYPRXLKLPAKWSFKSHTVLKNSEQAPRTPIFAEEVLGGEGIDGETIKPIERS 465
YG+ GAC YPR LKLPAKWSF SHT+LK+SEQAPRTPIF EE+LG E ++GE P ERS
Sbjct: 186 YGSPGACQYPRQLKLPAKWSFNSHTILKSSEQAPRTPIFTEEILGSENVEGEVEPPPERS 245
Query: 464 FWAKYWMYLIPLGLIVMNAVTQAMNMPEEQAGAQGGAGPAPQPA 333
FWAKYWMYLIPLGL+VMNAVTQA NM EE AG Q G G QPA
Sbjct: 246 FWAKYWMYLIPLGLVVMNAVTQASNMAEEPAGGQAG-GAQVQPA 288
>gb|AAH42237.1| Unknown (protein for IMAGE:5570892) [Xenopus laevis]
Length = 262
Score = 39.3 bits (90), Expect = 0.046
Identities = 18/42 (42%), Positives = 27/42 (63%), Gaps = 1/42 (2%)
Frame = -2
Query: 473 ERSFWAKYWMYLIPLGL-IVMNAVTQAMNMPEEQAGAQGGAG 351
++SF+AKYWMY+IP+ L ++M+ + A N G GG G
Sbjct: 220 QKSFFAKYWMYIIPVVLFLMMSGASDAGNQGGNGGGGGGGGG 261
>gb|AAH06065.1| Unknown (protein for IMAGE:3591916) [Mus musculus]
Length = 185
Score = 37.7 bits (86), Expect = 0.13
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 473 ERSFWAKYWMYLIPLGLIVMNAVTQAMNMPEEQAGAQGGAG 351
++SF+AKYWMY+IP+ L +M + P+ AG QGG G
Sbjct: 146 QKSFFAKYWMYIIPVVLFLMMS-----GAPD--AGGQGGGG 179
>ref|NP_778233.1| hypothetical protein LOC284361 [Homo sapiens]
gi|21432049|gb|AAH32948.1| LOC126122 [Homo sapiens]
gi|23271243|gb|AAH35001.1| Unknown (protein for
MGC:33245) [Homo sapiens]
Length = 262
Score = 37.7 bits (86), Expect = 0.13
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 473 ERSFWAKYWMYLIPLGLIVMNAVTQAMNMPEEQAGAQGGAG 351
++SF+AKYWMY+IP+ L +M + P+ AG QGG G
Sbjct: 219 QKSFFAKYWMYIIPVVLFLMMS-----GAPD--AGGQGGGG 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,529,095
Number of Sequences: 1393205
Number of extensions: 11703171
Number of successful extensions: 33256
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 31941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33236
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
