Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001899A_C02 KMC001899A_c02
(810 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P37216|AROG_LYCES Phospho-2-dehydro-3-deoxyheptonate aldolase... 231 9e-60
emb|CAA75092.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synt... 231 1e-59
dbj|BAC23040.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synt... 230 2e-59
sp|P21357|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase... 230 2e-59
sp|P27608|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase... 229 3e-59
>sp|P37216|AROG_LYCES Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast
precursor (Phospho-2-keto-3-deoxyheptonate aldolase 2)
(DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 2) gi|542033|pir||S40412
2-dehydro-3-deoxy-phosphoheptonate aldolase (EC
4.1.2.15) 2 precursor - tomato gi|410488|emb|CAA79856.1|
phospho-2-dehydro-3-deoxyheptonate aldolase
[Lycopersicon esculentum]
Length = 541
Score = 231 bits (589), Expect = 9e-60
Identities = 112/128 (87%), Positives = 118/128 (91%)
Frame = -2
Query: 809 RVKLPHLIRQ*RGAGQIVTWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAFFDVHDQEGS 630
RVKLPHLIR R AGQIVTWVSDPMHGNTIKAP GLKTR FDSIRAE+RAFFDVHDQEGS
Sbjct: 412 RVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGS 471
Query: 629 YPGGVHLEMTGQNVTECVGGSRAVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKR 450
+PGGVHLEMTGQNVTEC+GGSR VTFDDLSSRYHTHCDPRLNASQSLEL+F IAERLRKR
Sbjct: 472 HPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKR 531
Query: 449 RMNSLQSL 426
R+ S +L
Sbjct: 532 RLGSQSTL 539
>emb|CAA75092.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda
citrifolia]
Length = 535
Score = 231 bits (588), Expect = 1e-59
Identities = 112/129 (86%), Positives = 119/129 (91%)
Frame = -2
Query: 809 RVKLPHLIRQ*RGAGQIVTWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAFFDVHDQEGS 630
RVKLPHLIR R AGQIVTWVSDPMHGNTIKAP GLKTR FD+IRAE+RAFFDVH+QEGS
Sbjct: 406 RVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGS 465
Query: 629 YPGGVHLEMTGQNVTECVGGSRAVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKR 450
+PGGVHLEMTGQNVTEC+GGSR VTFDDL SRYHTHCDPRLNASQSLELAF IAERLRKR
Sbjct: 466 HPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTHCDPRLNASQSLELAFIIAERLRKR 525
Query: 449 RMNSLQSLA 423
R+ S +SLA
Sbjct: 526 RLGSPKSLA 534
>dbj|BAC23040.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Solanum
tuberosum]
Length = 538
Score = 230 bits (586), Expect = 2e-59
Identities = 111/124 (89%), Positives = 116/124 (93%)
Frame = -2
Query: 809 RVKLPHLIRQ*RGAGQIVTWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAFFDVHDQEGS 630
RVKLPHLIR R AGQIVTWVSDPMHGNTIKAP GLKTR FDSIRAE+RAFFDVHDQEGS
Sbjct: 412 RVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGS 471
Query: 629 YPGGVHLEMTGQNVTECVGGSRAVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKR 450
+PGGVHLEMTGQNVTEC+GGSR VTFDDLSSRYHTHCDPRLNASQSLEL+F IAERLRKR
Sbjct: 472 HPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKR 531
Query: 449 RMNS 438
R+ S
Sbjct: 532 RLGS 535
>sp|P21357|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast
precursor (Phospho-2-keto-3-deoxyheptonate aldolase 1)
(DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1)
Length = 538
Score = 230 bits (586), Expect = 2e-59
Identities = 111/124 (89%), Positives = 116/124 (93%)
Frame = -2
Query: 809 RVKLPHLIRQ*RGAGQIVTWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAFFDVHDQEGS 630
RVKLPHLIR R AGQIVTWVSDPMHGNTIKAP GLKTR FDSIRAE+RAFFDVHDQEGS
Sbjct: 412 RVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGS 471
Query: 629 YPGGVHLEMTGQNVTECVGGSRAVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKR 450
+PGGVHLEMTGQNVTEC+GGSR VTFDDLSSRYHTHCDPRLNASQSLEL+F IAERLRKR
Sbjct: 472 HPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKR 531
Query: 449 RMNS 438
R+ S
Sbjct: 532 RLGS 535
>sp|P27608|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast
precursor (Phospho-2-keto-3-deoxyheptonate aldolase 1)
(DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1) gi|170225|gb|AAA34068.1|
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
gi|228697|prf||1808327A deoxyheptulosonate phosphate
synthase
Length = 542
Score = 229 bits (585), Expect = 3e-59
Identities = 111/124 (89%), Positives = 116/124 (93%)
Frame = -2
Query: 809 RVKLPHLIRQ*RGAGQIVTWVSDPMHGNTIKAPSGLKTRSFDSIRAELRAFFDVHDQEGS 630
RVKLPHLIR R AGQIVTWVSDPMHGNTIKAP GLKTR FDSIRAE+RAFFDVH+QEGS
Sbjct: 413 RVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGS 472
Query: 629 YPGGVHLEMTGQNVTECVGGSRAVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKR 450
+PGGVHLEMTGQNVTEC+GGSR VTFDDLSSRYHTHCDPRLNASQSLELAF IAERLRKR
Sbjct: 473 HPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKR 532
Query: 449 RMNS 438
R+ S
Sbjct: 533 RLGS 536
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,649,531
Number of Sequences: 1393205
Number of extensions: 12956330
Number of successful extensions: 26920
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 25973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26900
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
