Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001896A_C01 KMC001896A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178147.1| putative sulfate transporter; protein id: At1g8... 42 0.005
dbj|BAB40169.1| P0707D10.27 [Oryza sativa (japonica cultivar-gro... 38 0.065
emb|CAC39421.1| putative sulfate transporter [Brassica napus] 33 1.2
gb|AAM92143.1|AF523355_1 neutral trehalase long isoform [Leptosp... 32 4.7
gb|AAL46630.1|AF328862_1 surface layer glycoprotein SgsE precurs... 31 6.1
>ref|NP_178147.1| putative sulfate transporter; protein id: At1g80310.1, supported by
cDNA: 120095., supported by cDNA: gi_17381199
[Arabidopsis thaliana] gi|25406653|pir||F96834 probable
sulfate transporter, 22471-23865 [imported] -
Arabidopsis thaliana
gi|12324980|gb|AAG52436.1|AC018848_7 putative sulfate
transporter; 22471-23865 [Arabidopsis thaliana]
gi|17381200|gb|AAL36412.1| putative sulfate transporter
protein [Arabidopsis thaliana]
gi|21537100|gb|AAM61441.1| putative sulfate transporter
[Arabidopsis thaliana]
Length = 464
Score = 41.6 bits (96), Expect = 0.005
Identities = 23/42 (54%), Positives = 29/42 (68%), Gaps = 1/42 (2%)
Frame = -2
Query: 479 SGAALGFIVGIVLYLLLKLREVECGGGFGFSQKS-QSSVDED 357
S AALGF G+VLYLLLKLR ++C FS+ S +S VD +
Sbjct: 417 SSAALGFGCGVVLYLLLKLRTLDCSSVTLFSRSSDESQVDSE 458
>dbj|BAB40169.1| P0707D10.27 [Oryza sativa (japonica cultivar-group)]
gi|21901979|dbj|BAC05530.1| P0038D11.6 [Oryza sativa
(japonica cultivar-group)]
Length = 463
Score = 37.7 bits (86), Expect = 0.065
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 479 SGAALGFIVGIVLYLLLKLREVE 411
S AALGFI GIVLYLLL+LR++E
Sbjct: 412 SSAALGFISGIVLYLLLRLRDLE 434
>emb|CAC39421.1| putative sulfate transporter [Brassica napus]
Length = 447
Score = 33.5 bits (75), Expect = 1.2
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -2
Query: 479 SGAALGFIVGIVLYLLLKLREVE 411
S AALGF G+VLYLLLKLR ++
Sbjct: 416 SSAALGFGCGVVLYLLLKLRTLD 438
>gb|AAM92143.1|AF523355_1 neutral trehalase long isoform [Leptosphaeria maculans]
Length = 874
Score = 31.6 bits (70), Expect = 4.7
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Frame = +1
Query: 208 IPIAILSHTTNKNFTLHIHIATSMVNSNLT----KPNPSSLQIRNQLV*AMKGVSSSTED 375
+P+ + T + + AT ++ +N P+PS +++ + ST
Sbjct: 79 VPLFLQPRTYRERVPVPSTYATCLIAANSKYLHHPPSPSQSTVQH------RKAPHSTAQ 132
Query: 376 WLFWENPNPPPHSTSLNLSNKYRTIPTMNPRAAP 477
+PPPHS S S RT ++P AAP
Sbjct: 133 LAVSARSSPPPHSMSSQYSKPRRTSTALDPYAAP 166
>gb|AAL46630.1|AF328862_1 surface layer glycoprotein SgsE precursor [Geobacillus
stearothermophilus]
Length = 903
Score = 31.2 bits (69), Expect = 6.1
Identities = 21/63 (33%), Positives = 29/63 (45%)
Frame = +1
Query: 184 STADHLLAIPIAILSHTTNKNFTLHIHIATSMVNSNLTKPNPSSLQIRNQLV*AMKGVSS 363
+ D + I +A S NK+ TL I A N N+ PNP+ L ++ V K V
Sbjct: 420 TAGDDEMTINLASSSVPVNKDLTLKIFGAVDY-NGNVINPNPAELTVKKTTVDITKPVVQ 478
Query: 364 STE 372
S E
Sbjct: 479 SIE 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,197,673
Number of Sequences: 1393205
Number of extensions: 10448617
Number of successful extensions: 26955
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26917
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
