Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001893A_C01 KMC001893A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_283936.1| RIKEN cDNA 5730406M06 [Mus musculus] 37 0.17
dbj|BAB30779.2| unnamed protein product [Mus musculus] 37 0.17
emb|CAB95463.1| hypothetical protein [Trypanosoma brucei] 37 0.17
ref|NP_014756.1| probable transcription factor, asparagine-rich ... 37 0.29
ref|XP_226775.1| similar to Sialidase (Neuraminidase) (NA) (Majo... 34 1.4
>ref|XP_283936.1| RIKEN cDNA 5730406M06 [Mus musculus]
Length = 814
Score = 37.4 bits (85), Expect = 0.17
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = -1
Query: 640 QKRDNASEIQRLT-EVVESLMRQVNDL------ENRLQMQNDVERQPNSRPSAIHSCMLT 482
Q + + +R+T E+ E + R+ N L E ND +R PN PS +L
Sbjct: 440 QIEEEKQQTERVTKEMNEFIHREQNSLSLLEASEADRDAVNDKKRTPNEAPS-----VLE 494
Query: 481 PSNLHVLPGKSKGKGKGLGSTKKSIAQPMKNQGKSVLQPSAAVRALSQSSSSDGSVSGS 305
P H KGK K GS S + + G S++V + S SSSS S + S
Sbjct: 495 PKREH------KGKEKERGSRSGSSSSGSSSSGSRTSSSSSSVSSSSYSSSSGSSCTSS 547
>dbj|BAB30779.2| unnamed protein product [Mus musculus]
Length = 694
Score = 37.4 bits (85), Expect = 0.17
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = -1
Query: 640 QKRDNASEIQRLT-EVVESLMRQVNDL------ENRLQMQNDVERQPNSRPSAIHSCMLT 482
Q + + +R+T E+ E + R+ N L E ND +R PN PS +L
Sbjct: 440 QIEEEKQQTERVTKEMNEFIHREQNSLSLLEASEADRDAVNDKKRTPNEAPS-----VLE 494
Query: 481 PSNLHVLPGKSKGKGKGLGSTKKSIAQPMKNQGKSVLQPSAAVRALSQSSSSDGSVSGS 305
P H KGK K GS S + + G S++V + S SSSS S + S
Sbjct: 495 PKREH------KGKEKERGSRSGSSSSGSSSSGSRTSSSSSSVSSSSYSSSSGSSCTSS 547
>emb|CAB95463.1| hypothetical protein [Trypanosoma brucei]
Length = 1174
Score = 37.4 bits (85), Expect = 0.17
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = -1
Query: 613 QRLTEVVESLMRQVNDLENRLQMQNDVERQPNSRPSAIHSCMLTPSNLHVLPGKSKGKGK 434
QR + E+ R N N L+ + + + S+ AI S SN L G+ +G
Sbjct: 317 QRSSSAAEAAERAPNGRRN-LKRKRNTTTETESKKRAISSTGFPASNEVDLKGRKQGARG 375
Query: 433 GL---GSTKKSIAQPMKNQGKSVLQPSAAVRALSQSSSSDGSVSGSC*TCEGSC 281
G+ GST + + + S S++ + S SSSS S S S + SC
Sbjct: 376 GVVGVGSTANASVESRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSC 429
>ref|NP_014756.1| probable transcription factor, asparagine-rich zinc-finger protein,
suppressor of mutation in the nuclear gene for the core
subunit of mitochondrial RNA polymerase; Azf1p
[Saccharomyces cerevisiae]
gi|1168610|sp|P41696|AZF1_YEAST Asparagine-rich zinc
finger protein AZF1 gi|1077019|pir||S46593 finger
protein AZF1, asparagine-rich - yeast (Saccharomyces
cerevisiae) gi|525274|emb|CAA81212.1| zinc finger
protein of 101170 Da [Saccharomyces cerevisiae]
gi|1050816|emb|CAA62111.1| ORF O3244 [Saccharomyces
cerevisiae] gi|1164958|emb|CAA64033.1| YOR3244w
[Saccharomyces cerevisiae] gi|1420303|emb|CAA99311.1|
ORF YOR113w [Saccharomyces cerevisiae]
Length = 914
Score = 36.6 bits (83), Expect = 0.29
Identities = 16/49 (32%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Frame = -1
Query: 448 KGKGKGLGSTKKSIAQPMKNQGKSVLQPSA-AVRALSQSSSSDGSVSGS 305
KG+GKG+G+ K +I+ P + ++L P+ A A++ S ++G+ G+
Sbjct: 745 KGRGKGVGTKKSTISSPENHPASTILNPNTNANNAIANDSENNGNPEGN 793
>ref|XP_226775.1| similar to Sialidase (Neuraminidase) (NA) (Major surface antigen)
[Rattus norvegicus]
Length = 585
Score = 34.3 bits (77), Expect = 1.4
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Frame = -1
Query: 595 VESLMRQVNDLENRLQMQNDVE---RQPNS------RPSAIHSCMLTPSNLHVL---PGK 452
V S + + + + QM + V ++P+S RPS++HS PS++H PG
Sbjct: 437 VHSTYQMPSSVHSTYQMPSSVHSTYQRPSSVHSTYQRPSSVHSTYQRPSSVHSTYQRPGG 496
Query: 451 SKGKGKGL---GSTKKSIAQPMKNQGKSVLQPSAAVRALSQSSSSDGSVSG 308
S + L GS S+ M N +LQP A ++ L ++ + G
Sbjct: 497 SASFCQPLPCSGSGCSSLESSMLNSSVPILQPKAGMQLLPLGKAAHSWIPG 547
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,708,340
Number of Sequences: 1393205
Number of extensions: 12067615
Number of successful extensions: 30784
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 29147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30601
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
