Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001886A_C01 KMC001886A_c01
(352 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_208500.1| similar to Down syndrome critical region protei... 33 0.92
pir||S53555 probable membrane protein YER148w-a - yeast (Sacchar... 31 3.5
dbj|BAC38199.1| unnamed protein product [Mus musculus] 30 7.8
ref|XP_126455.3| RIKEN cDNA 2610044A17 [Mus musculus] gi|2635210... 30 7.8
dbj|BAB27826.2| unnamed protein product [Mus musculus] 30 7.8
>ref|XP_208500.1| similar to Down syndrome critical region protein 8 (Malignant
melanoma associated protein 1) (MMA-1) (MTAG2 protein)
[Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.92
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 11/75 (14%)
Frame = -3
Query: 269 ICLHCCNFLSTSYDKVP------MPEKLLPFFWFMLQAQISLLVTW--TLSDKMAYS--I 120
ICL CC+F+S+ P +PE+LL F F+ V W TLS ++ S I
Sbjct: 12 ICLFCCSFISSCNSVFPCVIIFLLPEELLFVFLFLF-----FFVRWSLTLSSRLECSGAI 66
Query: 119 RSFCN-CFRKFQMML 78
+ CN C + Q +L
Sbjct: 67 SAHCNFCHPRVQKIL 81
>pir||S53555 probable membrane protein YER148w-a - yeast (Saccharomyces
cerevisiae)
Length = 192
Score = 31.2 bits (69), Expect = 3.5
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -3
Query: 266 CLHCCNFLSTSYDKVPMPEKLLPFFWFMLQAQI-SLLVTWTLSDKMAYSIRSFCNCFRK 93
C + CNF S LL F W SLLV + S YS RSF NC K
Sbjct: 120 CSNSCNFFSV----------LLKFEWLFNNLSCNSLLVRVSFSISCTYSARSFSNCLVK 168
>dbj|BAC38199.1| unnamed protein product [Mus musculus]
Length = 461
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -3
Query: 344 LFLSVGFLASEFPIENFVVILWGVCICLHCCNFLSTSYDKVPMPEKLLPFFWFMLQAQIS 165
L +++ L+S +EN VI+WG + L+ T Y KVP+ + F L+++ +
Sbjct: 68 LVITLTVLSSFILLENLTVIVWGAWL-LYQIYHRRTCYAKVPVQKVFANFLKISLESEYN 126
Query: 164 LLVT 153
+T
Sbjct: 127 PAIT 130
>ref|XP_126455.3| RIKEN cDNA 2610044A17 [Mus musculus] gi|26352101|dbj|BAC39687.1|
unnamed protein product [Mus musculus]
Length = 503
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -3
Query: 344 LFLSVGFLASEFPIENFVVILWGVCICLHCCNFLSTSYDKVPMPEKLLPFFWFMLQAQIS 165
L +++ L+S +EN VI+WG + L+ T Y KVP+ + F L+++ +
Sbjct: 68 LVITLTVLSSFILLENLTVIVWGAWL-LYQIYHRRTCYAKVPVQKVFANFLKISLESEYN 126
Query: 164 LLVT 153
+T
Sbjct: 127 PAIT 130
>dbj|BAB27826.2| unnamed protein product [Mus musculus]
Length = 344
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -3
Query: 344 LFLSVGFLASEFPIENFVVILWGVCICLHCCNFLSTSYDKVPMPEKLLPFFWFMLQAQIS 165
L +++ L+S +EN VI+WG + L+ T Y KVP+ + F L+++ +
Sbjct: 68 LVITLTVLSSFILLENLTVIVWGAWL-LYQIYHRRTCYAKVPVQKVFANFLKISLESEYN 126
Query: 164 LLVT 153
+T
Sbjct: 127 PAIT 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,691,196
Number of Sequences: 1393205
Number of extensions: 5317385
Number of successful extensions: 12320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12320
length of database: 448,689,247
effective HSP length: 92
effective length of database: 320,514,387
effective search space used: 7692345288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
